Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1880
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.6  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 26/118 (22%), Positives = 53/118 (44%)
 Frame = +3

Query: 237 RSVXTRVVKKKCTCMSQKRFFNRGVSKXKYNNNILKEPVLKILQCCDNNDISKKCSLPTE 416
           +S+  R + +  +    KRF +  V +   +++  + P   +L    + D +K+ S   +
Sbjct: 9   KSLSQRKIIRSRSRRYSKRFSSSIVDRRSPSSS--RSPSPSLLTSQPHQDHNKEKS---K 63

Query: 417 NNETLNSDTLNLCTLVQNCNQLKISSESNEPPTKSTHSDSSTKWWRNDIAKLKEKNQA 590
           NN   N DT  L       NQL+I S++++        +      RND+ + + K ++
Sbjct: 64  NNHHCNQDTEKL-------NQLEIESDNSKEVNDKKEENFIVDRLRNDLFECENKEKS 114


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 375 DNNDISKKCSLPTENNETLNSDTLNLCTLVQNCNQLKISSESNE 506
           ++N I    SL + + E L  D LNL T + + +    SSE N+
Sbjct: 343 NSNQIVSDNSL-SSSEEKLKQDILNLRTDISSSSSSISSSEEND 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,319
Number of Sequences: 438
Number of extensions: 4821
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)