Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1877
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    26   0.32 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.56 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.56 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   3.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.2  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 10  SXTSXSQALVELETNSDLKAQLRE 81
           S T+ S AL EL  N D++ +LRE
Sbjct: 309 SSTTMSNALYELALNQDVQKKLRE 332


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +1

Query: 316 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 486
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +1

Query: 316 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 486
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +1

Query: 316 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 486
           L S Y+ ++  +V   + +   +++KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 32  LLSNYNKLVRPVVNVTDAL--TVKIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 85


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 116 CSSISLAF---VM*SSRSWALRSELVSSSTSACEXEVL 12
           CS I+ A+   +    R W L S L+++  S C  ++L
Sbjct: 116 CSGITSAYKIEIDMCDRLWVLDSGLINNVRSVCPPQLL 153


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 16/78 (20%), Positives = 32/78 (41%)
 Frame = +1

Query: 109 ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVAN 288
           EL   KS +  +P+P  +    +      + +KK +G    F   +        + + + 
Sbjct: 552 ELKRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSSA 611

Query: 289 KQKRPRSRTLTSVYDAIL 342
           K++R  ++TL  V    L
Sbjct: 612 KKERKATKTLAIVLGVFL 629


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 474 VCIQEANGTRSYLRVPRTLFVNLAY 548
           VC++   G + YLR+     +NL +
Sbjct: 163 VCLENCTGYQQYLRLLEVPQINLEW 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,002
Number of Sequences: 438
Number of extensions: 2726
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)