Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1869
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   3.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   4.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   7.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   7.6  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +2

Query: 398 STRRVRSVLHRLSMKSNLQLRTKMKTHQFSN*SFRCSRRVTSEYLHRHQRK*SQNHE 568
           S R  +S+ HR   K+  Q +   +  +        S RVTS+   + Q++  Q+ +
Sbjct: 47  SLRNHKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQ 103


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 275 Y*NIATRNWRKLYQSYIV 328
           Y N    N++KLY++YI+
Sbjct: 105 YNNNYNNNYKKLYKNYII 122


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 275 Y*NIATRNWRKLYQSYIV 328
           Y N    N++KLY++YI+
Sbjct: 105 YNNNYNNNYKKLYKNYII 122


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 670  YILQHRXQNXNHCNTIRNNV 611
            ++++H+ +N    N + NNV
Sbjct: 1494 FVVEHKKKNQQEWNQVSNNV 1513


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 610 LHCFEWYYNDLXFXSDVVKCNLDSIDFLITXITI 711
           L C     ND+    + V+ NL +ID LI   TI
Sbjct: 61  LQCDLSNQNDILKVIEWVEKNLGAIDILINNATI 94


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 610 LHCFEWYYNDL 642
           +H FEW +ND+
Sbjct: 34  VHLFEWKWNDI 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,460
Number of Sequences: 438
Number of extensions: 4121
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)