Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1867
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.3  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 183 KSSPDTPQPDTVRDTLAYIP 124
           KS   TP+PD + + L ++P
Sbjct: 326 KSPYHTPEPDCIHELLGHMP 345


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 153 CQVVECRVNFSGVFNSLIRIHFNSTPDSKSIC 248
           C V E     SG  +  +RIH    P   ++C
Sbjct: 150 CDVCERAFEHSGKLHRHMRIHTGERPHKCTVC 181


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 86  FKVRNRSLYRDRSGMYANVSRTVSGCGVSGELFWSF 193
           F + +R ++R     Y N+  T   CG+ G +   F
Sbjct: 346 FYIISRYVFRSALEDYCNIVATHLVCGILGSILVPF 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,045
Number of Sequences: 438
Number of extensions: 3314
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)