Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1865
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.3  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 399 FP-SKASIQQIPTIVENYLLILQTSMHVNFNIKINY 295
           FP  K  + ++PT++ NY+  ++    +N N+   Y
Sbjct: 887 FPFDKHILDKLPTLISNYIEAVKEGKFMNVNMLDTY 922


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 680 ANVVN*ITGVIKFIFETVR 624
           A VV  + G++ + F+TVR
Sbjct: 219 AQVVTTVAGIVSYPFDTVR 237


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 680 ANVVN*ITGVIKFIFETVR 624
           A VV  + G++ + F+TVR
Sbjct: 219 AQVVTTVAGIVSYPFDTVR 237


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 382 NSTNSNNCRKLPSDFTNI 329
           N+  +NNC+KL  +  NI
Sbjct: 344 NNNYNNNCKKLYYNIINI 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,230
Number of Sequences: 438
Number of extensions: 4538
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)