Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1861
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   1.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.8  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   4.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = +3

Query: 150 WLTAARSSKTIAFHLKTGQNSNLRLRSVRCRCWKSTASSTLRAPPSAGTSVASTGSPGP 326
           WL    S+     +    ++     +S+ C+C+    ++TLR   S G+ +A      P
Sbjct: 49  WLGYCNSAINPCIYALFSKDFRFAFKSIICKCFCKRRTNTLRR-GSDGSQLAMRNDRSP 106


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = +3

Query: 150 WLTAARSSKTIAFHLKTGQNSNLRLRSVRCRCWKSTASSTLRAPPSAGTSVASTGSPGP 326
           WL    S+     +    ++     +S+ C+C+    ++TLR   S G+ +A      P
Sbjct: 497 WLGYCNSAINPCIYALFSKDFRFAFKSIICKCFCKRRTNTLRR-GSDGSQLAMRNDRSP 554


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 203 PEFKPKTPFGQMPVLEIDGK 262
           P  KP+TPF    +L ++ K
Sbjct: 8   PNRKPRTPFTTQQLLSLEKK 27


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 233 QMPVLEIDGKQYAQSTAICRYLGRKYGLAGANDEEAFEI 349
           QM  ++++  +YA  TAI  +  R   L G   E+  EI
Sbjct: 465 QMYAMKVNNAEYALLTAIVIFSERPNLLEGWKVEKIQEI 503


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +3

Query: 147 CWLTAARSSKTIAFHLKTGQNSNLRLRSVRC 239
           CW   + ++      L T Q    +LR  RC
Sbjct: 215 CWSLDSTAASDEDISLTTHQQKRHKLRVTRC 245


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 188  SSENWPEFKPKTPF 229
            +++N P+ KP+ PF
Sbjct: 1119 TADNKPQLKPQKPF 1132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,411
Number of Sequences: 438
Number of extensions: 2116
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)