Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1855
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.3  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   7.0  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   9.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.2  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 113 ERTYLLKTLAGCPIEEYKINR-LLNITLLEGNGN 211
           E   L KT+A CP  E  + +  L + L EG G+
Sbjct: 67  EEVVLAKTIAECPESENTVQKAALVLRLREGIGS 100


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 167 INRLLNITLLEGNGNFTDTDLFLIFSMLTGGSQGYTTLFHFLNNN 301
           +N L N+  +EGN +  +T  + ++ +L     GY   F F N N
Sbjct: 361 LNMLGNV--IEGNSDSINTKFYGMYDILARDILGYN--FDFQNKN 401


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 227 LFLIFSMLTGGSQGY 271
           L  IFSML GG  G+
Sbjct: 11  LLAIFSMLVGGFGGF 25


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 227 LFLIFSMLTGGSQGY 271
           L  +FSML GG  G+
Sbjct: 11  LLAVFSMLVGGFGGF 25


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 427 PGRIRVCRTHHRDFHEED 480
           PG + + RTH     EED
Sbjct: 58  PGNVNMIRTHSTXPXEED 75


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 191 LLEGNGNFTDTDLFLIFSMLTG 256
           L + + N+  T+ F+IF+M TG
Sbjct: 26  LNQEDSNWIITNSFIIFTMQTG 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,562
Number of Sequences: 438
Number of extensions: 3576
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)