Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1854
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 695 LGGKLLSS--GPAISSIGVSLVIGLGSSVEGDSLGLVSG 585
           LGG   SS  G    + G S+V+G  +   G  LG+ SG
Sbjct: 19  LGGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLGIASG 57


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +2

Query: 410 NLSIKKKQLL----LYKNQRNLQKKSVQHRANP*TVFMNKI*YQLQLRRPQTFLNKLLRS 577
           NL  +KK  +    LY N   L+K+ V  + N     +NK    +  +  +  ++ L+  
Sbjct: 450 NLEQEKKDSISHYHLYTNLTALRKRDVLKKGNFTIEILNKTVLAVVRQSEEEAVSLLINF 509

Query: 578 SQNLTLSPVNHL 613
           S+N T+  ++ L
Sbjct: 510 SKNNTIVDISKL 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.128    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,382
Number of Sequences: 438
Number of extensions: 4708
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)