Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1849
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   0.50 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   2.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   4.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   6.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   6.2  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   8.2  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   8.2  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 343 AVSTQNGFLSLRSWPGTRPPHRPSLFP 263
           ++  ++G +S  S PGT   H P+ FP
Sbjct: 382 SIRNRSGLVSGSSTPGTGREHDPAKFP 408


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 350 MSXSFNSKRVPLPPFLARNKATAPAFSIPSSNLSIDCDICESFASINLSR 201
           +S +  S     P   +   AT      PS+ + +  DI +S   +NLS+
Sbjct: 830 LSAAATSSTSTSPRPASSTAATLVLSGCPSNMMELQVDIADSQQPLNLSK 879


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 153 KDAKRIGGRRTPPN 194
           +DA+ + G R PPN
Sbjct: 149 RDARIVNGTRQPPN 162


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -1

Query: 309 VLGQEQGHRTGLLYSQLQSVDRLRYM--REFCQ 217
           +LG    H+T  LY    S   L Y+  ++F Q
Sbjct: 250 ILGMALSHKTQNLYYSAMSSHNLNYVNTKQFTQ 282


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 70  ALVDEVVDVLKLGKEIGEEIIASW 141
           A+ D +V  L +  EIG  I  SW
Sbjct: 81  AIADLLVTFLMMPLEIGWAITVSW 104


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 274 SLFPAPICRSIAIYARVLPVLI 209
           S+ P  +   IAIY  V+ VLI
Sbjct: 54  SIIPVVMAGIIAIYGLVVAVLI 75


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 416 LXGRRYTLICLSTG 375
           + GR+ T  C++TG
Sbjct: 35  MLGRKITFFCMATG 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,302
Number of Sequences: 438
Number of extensions: 2063
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)