Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1843
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   4.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.8  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 285 VVVMWNSWWLH 317
           VV+ W S+WLH
Sbjct: 246 VVISWVSFWLH 256


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 355 NA*SWLGFAREIDNIALRS*FRFDHAGKVKV 447
           N  +WL F R +  I LR+ +   H G V V
Sbjct: 47  NIPTWLSFIRIVLVILLRAGYVLIHIGSVPV 77


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 431  RGKSKLHSSLAGEGTPMWEWYNGASEPTR 517
            RG + L  +  G+  P  EWY G  E  R
Sbjct: 1328 RGSATLACNAVGD--PTREWYKGQGEQIR 1354


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 431  RGKSKLHSSLAGEGTPMWEWYNGASEPTR 517
            RG + L  +  G+  P  EWY G  E  R
Sbjct: 1324 RGSATLACNAVGD--PTREWYKGQGEQIR 1350


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +3

Query: 420 F*PRGESQSCIHHLLEKEHQC-GNGIM 497
           F    ++  CI  +LE  H C  NG++
Sbjct: 5   FYSEADASHCIQQILESVHHCHHNGVV 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,607
Number of Sequences: 438
Number of extensions: 4493
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)