Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1840
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.93 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.93 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.0  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 152 APGPTPDWTSTEPSNR 199
           APG +PDW ST    R
Sbjct: 583 APGQSPDWPSTSQIQR 598


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 226 PGEEFLP-RAPNPEEIVFEDDVTHGPEFQR 312
           P E+++P   PN E+ +FE+ V  G  F +
Sbjct: 149 PKEQYIPPELPNDEKSLFENGVEIGINFDK 178


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 290 VTSSSNTISSGLGARGRNSSPG 225
           +T S   +  GLG +G N S G
Sbjct: 192 ITQSQYLLQQGLGLQGHNPSSG 213


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 351 TCLLLRFGFFVLFPLEFGSV 292
           TC+L RFG  V F   +G++
Sbjct: 579 TCILQRFGVGVSFSAVYGAL 598


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 351 TCLLLRFGFFVLFPLEFGSV 292
           TC+L RFG  V F   +G++
Sbjct: 669 TCILQRFGVGVSFSAVYGAL 688


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 257 LGARGRNSSPGQIFLKICSACSTALSKSSPASGP 156
           L   GR+    ++ L  CS     L KS+P   P
Sbjct: 36  LACDGRSLKAHRVVLSACSPYFRELLKSTPCKHP 69


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 91  FYNVKDTSSPVSSVVDNVHVC 153
           FY+  D S  +  ++++VH C
Sbjct: 5   FYSEADASHCIQQILESVHHC 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,483
Number of Sequences: 438
Number of extensions: 4916
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)