Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1836
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   4.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.3  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 266 IYQRLLFSCNLRK*TVSFLFNVFLFYFVIIFLTF 367
           IYQRL  S  L++    F+F  +L   +I+ L++
Sbjct: 227 IYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSW 260


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 243 HTRKCVLKNKRQS*FIWFELGKYKNVIR 160
           +T+ CV    R S   W ++ K+ N I+
Sbjct: 106 NTKNCVNPYDRDSLSCWLQMTKHHNFIK 133


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -1

Query: 408 DCMYLNMYI 382
           DC+YLN+Y+
Sbjct: 104 DCLYLNVYV 112


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -1

Query: 408 DCMYLNMYI 382
           DC+YLN+Y+
Sbjct: 104 DCLYLNVYV 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,732
Number of Sequences: 438
Number of extensions: 3275
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)