Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1830
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   9.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/63 (25%), Positives = 24/63 (38%)
 Frame = +1

Query: 328 PKPGKDRRNPSSYRPITLLSHVGKLXERLLLRXMSPHILLRPEQXGFRXGHSTTLQLVRV 507
           P PG     P S  P  ++        ++  + +  HIL   +   F   HS  LQ  + 
Sbjct: 46  PPPGGPPGAPPSQNPSQMMISPASGIHQMQ-QLLQQHILSPTQLQSFMQQHSLYLQQQQQ 104

Query: 508 MHH 516
            HH
Sbjct: 105 QHH 107


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 132 HHSQRIAPHHQ 164
           HHS    PHHQ
Sbjct: 433 HHSHAATPHHQ 443


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 377 RCCRTWASXSSGCC*EXCRRTS 442
           RC R W   S+GC      R S
Sbjct: 20  RCSRDWFRISAGCVSRISNRIS 41


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 654 TAGVVPGGXILSW 692
           T G++ GG IL W
Sbjct: 10  TLGIIVGGFILCW 22


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 654 TAGVVPGGXILSW 692
           T G++ GG IL W
Sbjct: 458 TLGIIVGGFILCW 470


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 352 NPSSYRPITLLSHVGKLXERLLLRXMSPHIL 444
           NP+  + ITL+S  G+L  RLL   + P I+
Sbjct: 87  NPTP-QSITLISFPGELLMRLLKMFILPLIV 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,484
Number of Sequences: 438
Number of extensions: 4293
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)