Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1826
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.82 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.82 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.8  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 188 KVCQ*TNSMRVCCQRHGRMCNVFFIDLMYFLRII 289
           ++C  TN+ RV   R    CN+F + + +F  ++
Sbjct: 522 EICLLTNARRVASVRAETYCNLFSLSVDHFNAVL 555


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 188 KVCQ*TNSMRVCCQRHGRMCNVFFIDLMYFLRII 289
           ++C  TN+ RV   R    CN+F + + +F  ++
Sbjct: 490 EICLLTNARRVASVRAETYCNLFSLSVDHFNAVL 523


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/50 (28%), Positives = 19/50 (38%)
 Frame = +2

Query: 605 GGMVEAYQGQAAPSGAAGVPR*HAALKLACWVGMAMNRGIGHSSIDLTKL 754
           G   EAY+G        G  R  A  K+  W+G       G   +  T+L
Sbjct: 42  GKQYEAYEGIPYALPPVGKFRFKAPQKIPAWIGELSATKFGFPCLQYTQL 91


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/50 (28%), Positives = 19/50 (38%)
 Frame = +2

Query: 605 GGMVEAYQGQAAPSGAAGVPR*HAALKLACWVGMAMNRGIGHSSIDLTKL 754
           G   EAY+G        G  R  A  K+  W+G       G   +  T+L
Sbjct: 42  GKQYEAYEGIPYALPPVGKFRFKAPQKIPAWIGELSATKFGFPCLQYTQL 91


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 443 TREIYGARWSMTVNTQLKTIPLHSLPISTKYGT*ARW 553
           TRE     ++M+ +  ++ IPL ++P  +K      W
Sbjct: 349 TREHPSRNFTMSEDGMIEVIPLSAIPEPSKNPAMGHW 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,480
Number of Sequences: 438
Number of extensions: 4767
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)