Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1819
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.62 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.9  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    24   1.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +1

Query: 430 LKIRTYKFGRSINRQLKSTVLY 495
           +K  +  FGR+++R++K+TVL+
Sbjct: 453 VKFTSKLFGRALSRRIKATVLF 474


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 670 YMKNQVVNTKVVNDSRYNHSRKSYD 596
           Y K   +NT+++ND+ +  SR++ D
Sbjct: 474 YFKEANLNTRMLNDNVFAFSRETED 498


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 670 YMKNQVVNTKVVNDSRYNHSRKSYD 596
           Y K   +NT+++ND+ +  SR++ D
Sbjct: 474 YFKEANLNTRMLNDNVFAFSRETED 498


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +1

Query: 373 INLPSHTTIQI---RSYNN*SKLKIRTYKFGRSINRQLKSTVLYRFYMNVL 516
           +N+P   T+     R +   + ++  T+K    +N  LK T LY F  N L
Sbjct: 65  MNVPFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDSLKVTRLYEFSDNEL 115


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 78  DDDGAGDEPNADQLCDGRPAD 140
           DDDG  D+ +  +  +G+PA+
Sbjct: 394 DDDGDDDDDDDVEAANGKPAE 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,801
Number of Sequences: 438
Number of extensions: 4421
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)