Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1794
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.8  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    22   7.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 284 KVESIELDIKNYSALAQWCKDN 349
           KV SI  D+      AQW K+N
Sbjct: 187 KVISISPDLVETDMTAQWLKEN 208


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 481 PVLVGLYLCTSFIWPKARNSIGN*AIYNTMSK 386
           P  +  +L + F+W    NS+ N  IY T+++
Sbjct: 401 PDAIPAFLSSLFLWLGYCNSLLNPIIYATLNR 432


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 489 LFAQSLLASICAPALFGPKHGIP 421
           +F  +LLA+ICA   + P   +P
Sbjct: 5   IFIFALLATICAAFAYVPLPNVP 27


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 530 SFTDAAAAKEFIN 568
           S+T+AAA KEF++
Sbjct: 72  SYTNAAAVKEFLS 84


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 530 SFTDAAAAKEFIN 568
           S+T+AAA KEF++
Sbjct: 72  SYTNAAAVKEFLS 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,771
Number of Sequences: 438
Number of extensions: 5262
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)