Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1758
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 454 VRAAIDDWPRRLK 492
           + AA+D+WPR L+
Sbjct: 400 ITAAVDEWPRLLR 412


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 454 VRAAIDDWPRRLK 492
           + AA+D+WPR L+
Sbjct: 453 ITAAVDEWPRLLR 465


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 542 KNLFFVKFILVYE*LHNE*TCF 607
           KN+F V F+++   LH +  CF
Sbjct: 5   KNIFPVLFVIINVLLHGQVICF 26


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +1

Query: 361 LTNLVEPVSHTNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGSH 519
           L N +   +  N + +K+ LI+  A+ +       I   P R +  I  +G H
Sbjct: 287 LQNSLNGKNFNNDDDIKSYLIQFFANKNQKFYERGIMMLPERWQKVIDQNGQH 339


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 153 TVEESYNKQNDKVYAYSSEEASNRIPRVQRG 245
           T+ ESY+   + +YA  ++ A+   P   RG
Sbjct: 371 TLSESYSSYVNSMYASGAQFATPCTPSPPRG 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,335
Number of Sequences: 438
Number of extensions: 5015
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)