Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1756
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +1

Query: 421 HPHHEEHYASSGHGWGRSIDDAQNMAYSAHIKSD*ITAQKFFGPP 555
           H HH  H+A  GH  G   +  Q   +      D +   +F  PP
Sbjct: 280 HVHHANHHAILGHS-GFLCERHQKRYFFGRDSVDHVDFDEFLPPP 323


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 293 PKNRGMRAMIFSLAMAKRGRSCLIFFF-LPRASSNDLLMPSTAEDGSLNCTT 141
           P+NR     +++LA  + G + L+F F +     N L++ +   +  L+  T
Sbjct: 29  PQNRSQEEDLWNLATDRAGLAILLFLFSVATVFGNTLVILAVVRERYLHTAT 80


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 370 KKLLASKHTETSYEVVAHPHHEEHYASSGH 459
           +KLLA K TE   ++ A   H++    + H
Sbjct: 404 EKLLAFKMTEQQQQMQAQQQHQQQQQQTQH 433


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 436  EHYASSGHGWGRSIDDAQNMAYS 504
            +HY S G    RS+  A+N+  S
Sbjct: 1832 DHYGSRGSVGRRSVGSARNIPVS 1854


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,344
Number of Sequences: 438
Number of extensions: 3069
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)