Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1754
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   7.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 681  KAFDKVWHNXLIFKLFXMG 737
            KA+ KV  N +IF+++ MG
Sbjct: 1542 KAYQKVEENEIIFEIYKMG 1560


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 129 STQSVDPVHVELVDSEVERRASLPPLDALQPVTPMEVKDLIKDLRPR 269
           S +S+  V+         RRA+L  L     +TP E+   I D R R
Sbjct: 404 SIESITSVNSTSSPKPFPRRATLAQLHNFTTMTPQEIAQWI-DRRSR 449


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 701 PDFVERFCDVEXEGSRVDRFWSVKSHENVLREAVHLLY 588
           PD   R  DV  E   + +FW  K  +    +AV  L+
Sbjct: 199 PDLNYRNSDVREEMKNIMKFWLDKGIDGFRIDAVPHLF 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,144
Number of Sequences: 438
Number of extensions: 3751
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)