Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1748
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00638-1|CAA68669.1| 1304|Homo sapiens protein ( Human mRNA for ... 32 2.5
Y00062-1|CAA68269.1| 1143|Homo sapiens protein ( Human mRNA for ... 32 2.5
M23492-1|AAD15273.2| 1114|Homo sapiens T200 leukocyte common ant... 32 2.5
AL355988-3|CAI19378.1| 1306|Homo sapiens protein tyrosine phosph... 32 2.5
AL355988-2|CAI19379.1| 1145|Homo sapiens protein tyrosine phosph... 32 2.5
AL157402-4|CAI15641.1| 1306|Homo sapiens protein tyrosine phosph... 32 2.5
AL157402-3|CAI15640.1| 1145|Homo sapiens protein tyrosine phosph... 32 2.5
M60255-1|AAA36594.1| 527|Homo sapiens cerebroside sulfate activ... 30 7.7
>Y00638-1|CAA68669.1| 1304|Homo sapiens protein ( Human mRNA for
leukocyte common antigen (T200). ).
Length = 1304
Score = 31.9 bits (69), Expect = 2.5
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = +3
Query: 84 NAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELV 263
++K DS Q E+ P ELI + + +LP+K S G H L+
Sbjct: 1106 HSKRKDSRTVYQYQYTNWSVEQLPAEPKELISMIQVVKQKLPQKNSSEGNKHHKSTPLLI 1165
Query: 264 QLMKWKQARGKFYPQLSYLIKVNTPRAV-MQETKKAFRK 377
Q G F L+ L T V + + KA RK
Sbjct: 1166 HCRDGSQQTGIFCALLNLLESAETEEVVDIFQVVKALRK 1204
>Y00062-1|CAA68269.1| 1143|Homo sapiens protein ( Human mRNA for T200
leukocyte common antigen (CD45, LC-A). ).
Length = 1143
Score = 31.9 bits (69), Expect = 2.5
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = +3
Query: 84 NAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELV 263
++K DS Q E+ P ELI + + +LP+K S G H L+
Sbjct: 945 HSKRKDSRTVYQYQYTNWSVEQLPAEPKELISMIQVVKQKLPQKNSSEGNKHHKSTPLLI 1004
Query: 264 QLMKWKQARGKFYPQLSYLIKVNTPRAV-MQETKKAFRK 377
Q G F L+ L T V + + KA RK
Sbjct: 1005 HCRDGSQQTGIFCALLNLLESAETEEVVDIFQVVKALRK 1043
>M23492-1|AAD15273.2| 1114|Homo sapiens T200 leukocyte common antigen
precursor protein.
Length = 1114
Score = 31.9 bits (69), Expect = 2.5
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = +3
Query: 84 NAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELV 263
++K DS Q E+ P ELI + + +LP+K S G H L+
Sbjct: 916 HSKRKDSRTVYQYQYTNWSVEQLPAEPKELISMIQVVKQKLPQKNSSEGNKHHKSTPLLI 975
Query: 264 QLMKWKQARGKFYPQLSYLIKVNTPRAV-MQETKKAFRK 377
Q G F L+ L T V + + KA RK
Sbjct: 976 HCRDGSQQTGIFCALLNLLESAETEEVVDIFQVVKALRK 1014
>AL355988-3|CAI19378.1| 1306|Homo sapiens protein tyrosine
phosphatase, receptor type, C protein.
Length = 1306
Score = 31.9 bits (69), Expect = 2.5
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = +3
Query: 84 NAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELV 263
++K DS Q E+ P ELI + + +LP+K S G H L+
Sbjct: 1108 HSKRKDSRTVYQYQYTNWSVEQLPAEPKELISMIQVVKQKLPQKNSSEGNKHHKSTPLLI 1167
Query: 264 QLMKWKQARGKFYPQLSYLIKVNTPRAV-MQETKKAFRK 377
Q G F L+ L T V + + KA RK
Sbjct: 1168 HCRDGSQQTGIFCALLNLLESAETEEVVDIFQVVKALRK 1206
>AL355988-2|CAI19379.1| 1145|Homo sapiens protein tyrosine
phosphatase, receptor type, C protein.
Length = 1145
Score = 31.9 bits (69), Expect = 2.5
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = +3
Query: 84 NAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELV 263
++K DS Q E+ P ELI + + +LP+K S G H L+
Sbjct: 947 HSKRKDSRTVYQYQYTNWSVEQLPAEPKELISMIQVVKQKLPQKNSSEGNKHHKSTPLLI 1006
Query: 264 QLMKWKQARGKFYPQLSYLIKVNTPRAV-MQETKKAFRK 377
Q G F L+ L T V + + KA RK
Sbjct: 1007 HCRDGSQQTGIFCALLNLLESAETEEVVDIFQVVKALRK 1045
>AL157402-4|CAI15641.1| 1306|Homo sapiens protein tyrosine
phosphatase, receptor type, C protein.
Length = 1306
Score = 31.9 bits (69), Expect = 2.5
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = +3
Query: 84 NAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELV 263
++K DS Q E+ P ELI + + +LP+K S G H L+
Sbjct: 1108 HSKRKDSRTVYQYQYTNWSVEQLPAEPKELISMIQVVKQKLPQKNSSEGNKHHKSTPLLI 1167
Query: 264 QLMKWKQARGKFYPQLSYLIKVNTPRAV-MQETKKAFRK 377
Q G F L+ L T V + + KA RK
Sbjct: 1168 HCRDGSQQTGIFCALLNLLESAETEEVVDIFQVVKALRK 1206
>AL157402-3|CAI15640.1| 1145|Homo sapiens protein tyrosine
phosphatase, receptor type, C protein.
Length = 1145
Score = 31.9 bits (69), Expect = 2.5
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = +3
Query: 84 NAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELV 263
++K DS Q E+ P ELI + + +LP+K S G H L+
Sbjct: 947 HSKRKDSRTVYQYQYTNWSVEQLPAEPKELISMIQVVKQKLPQKNSSEGNKHHKSTPLLI 1006
Query: 264 QLMKWKQARGKFYPQLSYLIKVNTPRAV-MQETKKAFRK 377
Q G F L+ L T V + + KA RK
Sbjct: 1007 HCRDGSQQTGIFCALLNLLESAETEEVVDIFQVVKALRK 1045
>M60255-1|AAA36594.1| 527|Homo sapiens cerebroside sulfate
activator protein protein.
Length = 527
Score = 30.3 bits (65), Expect = 7.7
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 486 MADECVQAIPEMEGSDYTAREYLN-FVSHIRNVCDRLNEEQNGCGKKWFPHMVELXLWTH 662
+ +C+Q + +++ + T ++ V H++ CDRL K + E+ +
Sbjct: 197 VCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADISKNYISQYSEIAIQMM 256
Query: 663 NIVSDLQPQ 689
+ D QP+
Sbjct: 257 MHMQDQQPK 265
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,113,987
Number of Sequences: 237096
Number of extensions: 2706082
Number of successful extensions: 13085
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13085
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -