Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1731
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   5.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 11   SDQSTS*ANQSTILRASSSSTISLGRLIFFFATSRRIH 124
            SD+S S  +Q T  R  SS+ +  G+L    A S  I+
Sbjct: 1782 SDESESDPDQLTSSRTESSNQLDAGKLKHIRAVSDFIY 1819


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 11   SDQSTS*ANQSTILRASSSSTISLGRLIFFFATSRRIH 124
            SD+S S  +Q T  R  SS+ +  G+L    A S  I+
Sbjct: 1778 SDESESDPDQLTSSRTESSNQLDAGKLKHIRAVSDFIY 1815


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 318 SMCWVLVANKVYSVRRSHLVW*KLKPARMT 407
           S+C  L+  +VY+V  SH +   L PA ++
Sbjct: 86  SVCKSLIERQVYAVVVSHPLTGDLSPAAVS 115


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 106 HFPQDPRSCSVQEYGERNCPN*SYFCDS 189
           H P +P+S +VQ+Y +++     +  DS
Sbjct: 418 HRPFEPKSTAVQKYQDQDYQPIYFVADS 445


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 365 KSPSLVKIKTCQNDRIRPDVATLKNANLKGQCFKRVLY 478
           +SP LV + T + D    +V  +KN +    C +R+ Y
Sbjct: 194 RSPELVPMPTLKGDGRHMEVIKIKNFD---NCDQRINY 228


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/53 (18%), Positives = 24/53 (45%)
 Frame = +1

Query: 202 IPSYFPQPYYSCGRIFFVLFRFILSPNSKLTGSILRRVLPCAGYWWRTKCIAY 360
           +P+   + +Y+C    ++   F ++   K     +  ++PC G  + T  + Y
Sbjct: 211 VPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTVLVFY 263


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 468 VCCMPLSIIYLSQQCARYGLKCRYLPDPKLSLSLEHQVRV 587
           VC + +S   ++   A  G++C    D + +L +  ++RV
Sbjct: 126 VCTVEVSSENMTVTFANLGIQCVKKKDIEEALKIREEIRV 165


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 468 VCCMPLSIIYLSQQCARYGLKCRYLPDPKLSLSLEHQVRV 587
           VC + +S   ++   A  G++C    D + +L +  ++RV
Sbjct: 126 VCTVEVSSENMTVTFANLGIQCVKKKDIEEALKIREEIRV 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,077
Number of Sequences: 438
Number of extensions: 3931
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)