Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1727
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.4  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   8.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 680  GIHVSPQIXLRKYVHWGTLDGVL 612
            G+HV+P++     +H  TL+ VL
Sbjct: 1002 GVHVTPELIYEYQIHPKTLNEVL 1024


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 477 ITSXLASDIKAYFKHAANAYEKEK 548
           I+S  ASD  AYF  A+N Y +++
Sbjct: 874 ISSAEASDSGAYFCQASNLYGRDQ 897


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 477 ITSXLASDIKAYFKHAANAYEKEK 548
           I+S  ASD  AYF  A+N Y +++
Sbjct: 870 ISSAEASDSGAYFCQASNLYGRDQ 893


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 307 SPASSFE*AGVLTHLKFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGN 152
           S A+S E   + TH +  ++LR  R     S  L DE   K +  ++  EGN
Sbjct: 220 STAASDEDISLTTHQQKRHKLRVTRCYSSDSAVLSDEDQTKGWDGSNMVEGN 271


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 115 LSPLYPVPTID 83
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 115 LSPLYPVPTID 83
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 107 PIPSSDDRFARQNRYGPPSGFP 42
           P  S  ++  R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRLRYIGPPTSFP 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,669
Number of Sequences: 438
Number of extensions: 3560
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)