Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1719
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   7.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.6  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 402 NRFLRTTILKKNRXLDLKLEIVL*SDQSYVWFRCSDSWW 286
           N+F  T  L     L+L L + L   Q  +WF+   + W
Sbjct: 25  NKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 63


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 140 ARRSALHYQRFRLKIS 187
           ARR+ ++Y+RF  KI+
Sbjct: 491 ARRACMNYERFTYKIN 506


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 140 ARRSALHYQRFRLKIS 187
           ARR+ ++Y+RF  KI+
Sbjct: 491 ARRACMNYERFTYKIN 506


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +3

Query: 537 CIKRSER---RKNRNGLPIQVPNFLKTATSIHGRLELLNHKR*PVRFDALEYEIN 692
           CI R  R   ++ R     Q P+ +  A+  HG LEL       +  + L+ E N
Sbjct: 342 CILRMSRPSDKEEREAQKSQKPSPVTGASKSHGDLELRQRSSKSLLANVLDLEDN 396


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 202 HRPAPVNISDEDCCKEWGC 258
           +RP P N+  ++ CK+  C
Sbjct: 109 YRPHPHNLVGKEACKQGVC 127


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 202 HRPAPVNISDEDCCKEWGC 258
           +RP P N+  ++ CK+  C
Sbjct: 109 YRPHPHNLVGKEACKQGVC 127


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 160  LPAVPPQNFRCPPL 201
            +P++PP++ RC  L
Sbjct: 1110 VPSIPPEDVRCAAL 1123


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 178 EAEPLVMESRPPGSPALRSRRNSVARSP*GREGL 77
           EA P    + P  +    S     ARSP G +GL
Sbjct: 735 EASPRSPNASPSPAEQCASTTTITARSPQGSQGL 768


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 160  LPAVPPQNFRCPPL 201
            +P++PP++ RC  L
Sbjct: 1106 VPSIPPEDVRCAAL 1119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,236
Number of Sequences: 438
Number of extensions: 5342
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)