Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1714
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.67 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.2  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 295 HDLGVRAQRADQLVALGVVQHAVG*SVVRDLAEE 194
           +DL     R+  + A+ VVQ  V  +V+RDL  E
Sbjct: 478 NDLATEHDRSVMIQAIRVVQKLVNTTVMRDLGVE 511


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 9   HEASSRTRAPPTFRSTSKVSPCT 77
           HEA S   + P F S +K+ P T
Sbjct: 282 HEAESEHTSTPNFLSEAKIFPPT 304


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 90   RPVRTCAAWCTCVRPPLSP 146
            RPV +CA+ CT V     P
Sbjct: 1706 RPVVSCASGCTAVETKSKP 1724


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 171 RTPRRVXDTARAEGARTCTTQRRSGRAACTDACTEKPSTL 52
           RT  +   T +++G+RT   +    R A    C EK   L
Sbjct: 35  RTVTKRPKTKKSQGSRTTHNELEKNRRAHLRNCLEKLKVL 74


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 120 CTTQRRSGRAACTDACT 70
           C+T + +G   C + CT
Sbjct: 153 CSTYQSNGEEVCLENCT 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,835
Number of Sequences: 438
Number of extensions: 1655
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)