Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1493
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   0.82 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   0.82 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   7.6  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 406 VTSIPSEEDGEHPVACVVRRKDATVTAEEIKDLVADKLSD 287
           VT + SEE G +PVA  + + +A    +E  DL+A    D
Sbjct: 335 VTGVTSEE-GLYPVAEFIAKPEALKLLDENWDLIAPYFLD 373


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 406 VTSIPSEEDGEHPVACVVRRKDATVTAEEIKDLVADKLSD 287
           VT + SEE G +PVA  + + +A    +E  DL+A    D
Sbjct: 335 VTGVTSEE-GLYPVAEFIAKPEALKLLDENWDLIAPYFLD 373


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 448 EGVIRTHEGVLDVSVTSIPSEEDG 377
           +G  + H GV DVS+   P EE G
Sbjct: 4   KGSGKVHFGVDDVSLYGTPKEEPG 27


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 448 EGVIRTHEGVLDVSVTSIPSEEDG 377
           +G  + H GV DVS+   P EE G
Sbjct: 4   KGSGKVHFGVDDVSLYGTPKEEPG 27


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 448 EGVIRTHEGVLDVSVTSIPSEEDG 377
           +G  + H GV DVS+   P EE G
Sbjct: 4   KGSGKVHFGVDDVSLYGTPKEEPG 27


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -2

Query: 346 KDATVTAEEIKDLVADKLSDSKRLRGGVIFMDELPMTSVGKVAR 215
           KD+ V  +   D +  KL    R RG +IF  +  +  V +  +
Sbjct: 319 KDSGVAKDAAYDNIVLKLLTKPRARGCIIFGSDQEVAGVMRAVK 362


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 572 CEGLSSFFWIQVVLC 616
           C+GL+S F IQV  C
Sbjct: 242 CDGLTSVFRIQVDEC 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,414
Number of Sequences: 438
Number of extensions: 4342
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)