Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1478
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.10 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.0  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   9.0  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 43  PPDGEWLPSPMDFSNARGRAKPLPKYIVLIY 135
           PPD  W P  + F+NA G  +   K  VLIY
Sbjct: 104 PPDKVWKPDIVLFNNADGNYEVRYKSNVLIY 134


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +1

Query: 379 SLPFTKNIIIYYVINTLSRFKHENVKFDSCQRFICKYLLSV 501
           +LP     + YYV   LS+     V  D+  +    Y L +
Sbjct: 255 TLPGAMEGLKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGL 295


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +1

Query: 379 SLPFTKNIIIYYVINTLSRFKHENVKFDSCQRFICKYLLSV 501
           +LP     + YYV   LS+     V  D+  +    Y L +
Sbjct: 308 TLPGAMEGLKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGL 348


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 412 YVINTLSRFKHENVKFDSCQRF 477
           Y + T S FK+  +KF   + F
Sbjct: 50  YTLKTTSPFKNTEIKFKLGEEF 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,869
Number of Sequences: 438
Number of extensions: 2914
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)