Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1461
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 22/93 (23%), Positives = 42/93 (45%)
 Frame = -3

Query: 636 LNKKRKIIRMALAFRGVIRNVARRLQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQID 457
           L+   K++R  +    V+R V  +L++    D    +++  T     + +YD ++  +  
Sbjct: 37  LSNYNKLVRPVVNTSDVLR-VCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWE-- 93

Query: 456 VPSFSGAFGXLPKHVPTLAVFRPGVVTIXENDG 358
            P   G    L  HVP+  ++RP +V     DG
Sbjct: 94  -PKEYGGVKML--HVPSDHIWRPDIVLYNNADG 123


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 22/93 (23%), Positives = 42/93 (45%)
 Frame = -3

Query: 636 LNKKRKIIRMALAFRGVIRNVARRLQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQID 457
           L+   K++R  +    V+R V  +L++    D    +++  T     + +YD ++  +  
Sbjct: 37  LSNYNKLVRPVVNTSDVLR-VCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWE-- 93

Query: 456 VPSFSGAFGXLPKHVPTLAVFRPGVVTIXENDG 358
            P   G    L  HVP+  ++RP +V     DG
Sbjct: 94  -PKEYGGVKML--HVPSDHIWRPDIVLYNNADG 123


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 450 SFSGAFGXLPKHVPT 406
           ++SG+   LPKH+PT
Sbjct: 371 TYSGSPTELPKHLPT 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,300
Number of Sequences: 438
Number of extensions: 2808
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)