Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1370
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    32   0.004
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    25   0.68 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.8  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   6.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 32.3 bits (70), Expect = 0.004
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 95  FTHRYGFFFLFPTK*FIKTD---NIIQFIYVCWQQQQ 196
           FT+RYGF FL     FI T+       F+Y+ W Q++
Sbjct: 223 FTYRYGFSFLLYVSGFITTEVAGTYAIFLYISWHQKE 259



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 563 PFSYRKIFQFIIY 525
           PF+YR  F F++Y
Sbjct: 222 PFTYRYGFSFLLY 234


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 238 VILNEYTYRYNKWFLLLLPAHINELYNVVCFNKLFSRK 125
           ++  E    Y + F L+     NE++N V F+K+F  K
Sbjct: 216 LLFKELQAAYEETFSLVFTKIDNEIFNRVPFDKIFPPK 253


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 537 IYNLFRNXFAFFKR 496
           IYN F+N F +F+R
Sbjct: 530 IYNWFQNTFCYFRR 543


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 186 CQHT*MNCIMLSVLINYLVGNRKKKPYLCVNC 91
           C+    +C+  S+L ++L  +     Y C NC
Sbjct: 19  CEKCSYSCVNKSMLNSHLKSHSNVYQYRCANC 50


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 156 LSVLINYLVGNRKKKPYLCVNCL 88
           LSVL  YL  +  +K  LC+N L
Sbjct: 252 LSVLAFYLPADSGEKIALCINIL 274


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 226 EYTYRYNKWFLLLLP 182
           EY YR+NK +  L P
Sbjct: 125 EYAYRFNKCYAELSP 139


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 172 LCVLATTTKTICYICMYT 225
           LCV  + + T+  +C+Y+
Sbjct: 740 LCVAISLSATVTLVCLYS 757


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 172 LCVLATTTKTICYICMYT 225
           LCV  + + T+  +C+Y+
Sbjct: 830 LCVAISLSATVTLVCLYS 847


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,746
Number of Sequences: 438
Number of extensions: 3784
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)