Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1358
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 479 QTPYHLVTVQDLTSQVQHSRAVIRTDRPTIPA 574
           Q+ +H+ T  +   ++ HS ++ R+ R TI A
Sbjct: 105 QSYFHIATTSNEFIRIHHSGSITRSIRLTITA 136


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 479 QTPYHLVTVQDLTSQVQHSRAVIRTDRPTIPA 574
           Q+ +H+ T  +   ++ HS ++ R+ R TI A
Sbjct: 105 QSYFHIATTSNEFIRIHHSGSITRSIRLTITA 136


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 479 QTPYHLVTVQDLTSQVQHSRAVIRTDRPTIPA 574
           Q+ +H+ T  +   ++ HS ++ R+ R TI A
Sbjct: 44  QSYFHIATTSNEFIRIHHSGSITRSIRLTITA 75


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 206 NYYIFTLSRLDVYILLS 256
           NYY+F+L+  D+ +L+S
Sbjct: 89  NYYLFSLAVSDLLLLIS 105


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -2

Query: 105 KFFDGFFNICAVLILLVFIQY 43
           K  D F ++C V + +  ++Y
Sbjct: 305 KAVDAFMSVCTVFVFMALMEY 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,014
Number of Sequences: 438
Number of extensions: 4316
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)