Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1350
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.91 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 281 ERLRRMXGRI*XRXTLK-HDYSIS*ICSHYKVVLDNKASAFGMEDEPFNYFSCYQTLFRI 457
           E+L  + G       L   DY IS I   ++ +L    S FG  D P N  +  Q L+ +
Sbjct: 486 EKLSELLGHAFHSQVLSMSDYDISNI--EHEALLLVITSTFGNGDPPENGEAFAQNLYAM 543

Query: 458 QVS*RFINKVN 490
           +++  +IN  N
Sbjct: 544 KMNETYINSGN 554


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/59 (20%), Positives = 29/59 (49%)
 Frame = -1

Query: 598  MKPMKIEEIMAQEVQNXXGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVI 422
            ++  +++ ++  + Q+     +QR+   +  GKP  V +   P      +Q+ + AKV+
Sbjct: 1061 IQQQQLKRVVTNQQQSIQTSGMQRIIAQIG-GKPIAVQIQQSPHQQQQQQQQKILAKVL 1118


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 520 LVLCLGKPADVYLIDEPSAYLD 455
           LV+CL  P DV +I   + Y+D
Sbjct: 89  LVICLIDPRDVEIILSSNVYID 110


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 363 IIKSCSTTKPVRLAWRMN 416
           +IK+ + T P++++WR N
Sbjct: 238 LIKNQTITCPIKVSWRGN 255


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 363 IIKSCSTTKPVRLAWRMN 416
           +IK+ + T P++++WR N
Sbjct: 289 LIKNQTITCPIKVSWRGN 306


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 363 IIKSCSTTKPVRLAWRMN 416
           +IK+ + T P++++WR N
Sbjct: 238 LIKNQTITCPIKVSWRGN 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,512
Number of Sequences: 438
Number of extensions: 3007
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)