Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1243
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.69 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.7  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   4.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   8.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 379 GNTSPGKMFGGMASPISGFGXTQSNSTFENLAT 281
           G TSP        SPI+G G + S S  ENL++
Sbjct: 580 GKTSPNSAVRKCMSPINGSGASGSGSA-ENLSS 611


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 601 LIFGATDGGEVCLGATEGLAGLRRAEASCRI 693
           ++F     G  CLG++     LRRA AS  +
Sbjct: 570 VLFAVVLAGATCLGSSIKAMWLRRALASLMV 600


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 338 SYIRFRVYTVELD 300
           S +RFR +T+ELD
Sbjct: 29  SLVRFRRFTIELD 41


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/38 (28%), Positives = 14/38 (36%)
 Frame = -3

Query: 476 WVFRWIQQEPEQRIRSAGFVRXWKRVRRHSGLREHLPR 363
           WV  WI  E      + G           +G+R  LPR
Sbjct: 260 WVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPR 297


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 375 TPPPGKCLGEWPVLY 331
           T  PGK LGE  +LY
Sbjct: 158 TLAPGKVLGELAILY 172


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 355 FGGMASPISGFGXTQSNS 302
           FG  +S + GFG T ++S
Sbjct: 112 FGATSSMVPGFGSTAASS 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,677
Number of Sequences: 438
Number of extensions: 3399
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)