Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1197
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 213  QSPIILRYKFIKIKHLHFLSLV 278
            Q PIIL  + + IK LH L ++
Sbjct: 1238 QQPIILPSQLLNIKTLHGLKVI 1259


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 518 KRIPIKINNMDMVVKRNVRVSYIFLPI 438
           K +  +IN+ D++ KRN    ++  PI
Sbjct: 3   KHLTQRINSCDLLKKRNENDPFLKRPI 29


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 472 LLTTMSILFIFIGIRFYTD 528
           ++TTMS+L   + + +Y D
Sbjct: 363 MITTMSLLLPGVAVNYYGD 381


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 472 LLTTMSILFIFIGIRFYTD 528
           ++TTMS+L   + + +Y D
Sbjct: 363 MITTMSLLLPGVAVNYYGD 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,371
Number of Sequences: 438
Number of extensions: 3742
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)