Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1194
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.8  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   4.9  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   4.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.9  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   4.9  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 55  PPDGEWLPSPMDFSNARG 108
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 216 GWYVAKKISGNALXMTAVAPGSMDELYSG-GGRCDGKNXM 332
           GW +  +I  N L    + PG+   L+ G G +  G N +
Sbjct: 13  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNEL 49


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 216 GWYVAKKISGNALXMTAVAPGSMDELYSG-GGRCDGKNXM 332
           GW +  +I  N L    + PG+   L+ G G +  G N +
Sbjct: 18  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNEL 54


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 362 HSPWNIRYKIQREPKSL 412
           H PWN    +QR  K +
Sbjct: 462 HEPWNAPLNVQRAAKCI 478


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 216 GWYVAKKISGNALXMTAVAPGSMDELYSG-GGRCDGKNXM 332
           GW +  +I  N L    + PG+   L+ G G +  G N +
Sbjct: 18  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNEL 54


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 520 NSIRKPDVTAAAKGSSSLISYITHKY 597
           N I  PDV  AAK +  L   + H++
Sbjct: 73  NIIAIPDVVEAAKDADILTFVVPHQF 98


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 31  LVGKRXYGPPDGEWLP 78
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,425
Number of Sequences: 438
Number of extensions: 4367
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)