Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1172
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.4  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    23   3.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 625 PQKNGFNYIHFIHVTALALETI 560
           P+K+G   + + HVT + L++I
Sbjct: 54  PKKDGQATVVYFHVTVMGLDSI 75


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 390 NKRNPSDGGHIKGKTKLLFLFNSEHFYIY 304
           +KR P+    ++GK K     NSE+F I+
Sbjct: 27  DKRAPTGHQEMQGKEKNSASLNSENFGIF 55


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 429 IDLXTTKSAGSASREINLFLVVNLGMYTYYYVHIEK 536
           +DL  T +  S+S    +  +V LG+Y   Y + +K
Sbjct: 186 LDLTPTYAVVSSSISFYVPCIVMLGIYCRLYCYAQK 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,766
Number of Sequences: 438
Number of extensions: 3395
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)