Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1164
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.8  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    23   4.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.5  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   9.5  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +2

Query: 302 QVYNDXDNIFETSSYYGTSSYLVILKPNLQHVHR-TPYNYNNQET 433
           Q YND  N++     Y T  +   + P L   H   P   +N ET
Sbjct: 227 QFYNDDANVYILPDPYNTKFFRYRITPELYSEHLVVPEIEDNLET 271


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 95  KALLTFDALRYREIHFMCAISANFEIAEIG 184
           K L  F+A  ++++HFM   + N E  E G
Sbjct: 50  KKLGCFEACVFQKLHFMDGNTLNVEKLESG 79


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 681 TKGSDMRFVAHLFXKKRGERNVCI 610
           ++GS   +   +F ++  ERNVCI
Sbjct: 146 SEGSYGEYGIEVFTREATERNVCI 169


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 681 TKGSDMRFVAHLFXKKRGERNVCI 610
           ++GS   +   +F ++  ERNVCI
Sbjct: 236 SEGSYGEYGIEVFTREATERNVCI 259


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 105 LHLMHYAIEKYILCVPYQQILKL 173
           L + HY +++Y   V +  +LKL
Sbjct: 66  LSIQHYNVDEYSHTVDFHVMLKL 88


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 110 FDALRYREIHFMCAISANFEIAEIG 184
           F+A  ++++HFM   + N E  E G
Sbjct: 55  FEACVFQKLHFMDGNTLNVEKLESG 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,244
Number of Sequences: 438
Number of extensions: 3846
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)