Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1149
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    27   0.20 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    24   1.9  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   3.3  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   3.3  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   3.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   3.3  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   4.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = -2

Query: 670 YKMKLDIALIFNVYFQRYYL-------TWTVTRYRSLHIHC 569
           Y   L++  I+ +Y  RY L       TWT+T Y  +++ C
Sbjct: 44  YYQNLNLGEIYYIYNPRYPLPYSGSKCTWTITSYHRINLKC 84


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 6/17 (35%), Positives = 15/17 (88%)
 Frame = +2

Query: 605 PGQVIPLKIDIENKSNV 655
           PG+++PL+ D+ N++++
Sbjct: 55  PGKLVPLQCDLSNQNDI 71


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 221 STDTMHTGNEEYFQISYYLLGSNTGNEIEIPXGKHIYNFTCTLPP 355
           S  T+H  N  Y ++ YY +  N   +I +P    +  +    PP
Sbjct: 86  SNKTIHNNNNNYKKLQYYNI--NYIEQIPVPVPVPVPVYYGNFPP 128


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 221 STDTMHTGNEEYFQISYYLLGSNTGNEIEIPXGKHIYNFTCTLPP 355
           S  T+H  N  Y ++ YY +  N   +I +P    +  +    PP
Sbjct: 86  SNKTIHNNNNNYKKLQYYNI--NYIEQIPVPVPVPVPVYYGNFPP 128


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 221 STDTMHTGNEEYFQISYYLLGSNTGNEIEIPXGKHIYNFTCTLPP 355
           S  T+H  N  Y ++ YY +  N   +I +P    +  +    PP
Sbjct: 86  SNKTIHNNNNNYKKLQYYNI--NYIEQIPVPVPVPVPVYYGNFPP 128


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 221 STDTMHTGNEEYFQISYYLLGSNTGNEIEIPXGKHIYNFTCTLPP 355
           S  T+H  N  Y ++ YY +  N   +I +P    +  +    PP
Sbjct: 319 SNKTIHNNNNNYKKLQYYNI--NYIEQIPVPVPVPVPVYYGNFPP 361


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +2

Query: 221 STDTMHTGNEEYFQISYYLLGSNTGNEIEIPXGKHIY 331
           S  T+H  N  Y ++ YY +       + +P    +Y
Sbjct: 86  SNKTIHNNNNNYKKLQYYNINYIEQIPVPVPIPVPVY 122


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 620  VLLDLDSNQIQEPAHPLL 567
            V L+LDS+   EP HP++
Sbjct: 979  VSLNLDSDLPVEPTHPII 996


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,909
Number of Sequences: 438
Number of extensions: 5379
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)