Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1143
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.3  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   9.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.2  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   9.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 199 AFYTDDAIVINAHVDRSKRDTTNSTRDGKQLLL 297
           +F  D   V++ H D+ +        DGK L+L
Sbjct: 128 SFVADFVKVLSWHTDQGEEFVPGDDYDGKYLVL 160


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 157 NVPETDYGFSSKDGAFYTDDAIVINAHVDRSKRDTTNSTRDGKQLL 294
           ++ E   G S+K G  + DDA ++      +   TTN  +  K L+
Sbjct: 448 SISEIMSGTSNKYGVCHADDAYMVVDTPFLASTTTTNDIKMQKVLI 493


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 157 NVPETDYGFSSKDGAFYTDDAIVINAHVDRSKRDTTNSTRDGKQLL 294
           ++ E   G S+K G  + DDA ++      +   TTN  +  K L+
Sbjct: 448 SISEIMSGTSNKYGVCHADDAYMVVDTPFLASTTTTNDIKMQKVLI 493


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 382 FRDCYPLFKVA 414
           FRD  PLFK+A
Sbjct: 38  FRDLQPLFKLA 48


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 384 PGLLSIV*SCRPFWLGW 434
           PG++ +  S   FWL W
Sbjct: 310 PGIILVTSSFITFWLEW 326


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 384 PGLLSIV*SCRPFWLGW 434
           PG++ +  S   FWL W
Sbjct: 279 PGIILVTSSFITFWLEW 295


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 384 PGLLSIV*SCRPFWLGW 434
           PG++ +  S   FWL W
Sbjct: 330 PGIILVTSSFITFWLEW 346


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 384 PGLLSIV*SCRPFWLGW 434
           PG++ +  S   FWL W
Sbjct: 279 PGIILVTSSFITFWLEW 295


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -3

Query: 292 EVVFRLWLNSLCHVLIGLH 236
           E+ +++ L S C +++G H
Sbjct: 205 ELAYKMGLESTCTLILGRH 223


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 454 RNVPSPNHPSQKGRQL*TMDN 392
           RN+ S +H  +K +QL   DN
Sbjct: 3   RNISSYSHHDEKFKQLRNEDN 23


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +1

Query: 469 ISADNMEVFGVCCTEPLLPLLXKNRMCKDXDYXRVNYL 582
           + A   E +  CCTEP   +     M +   +  VN +
Sbjct: 220 VPASRNEEYYPCCTEPYSDITFNITMRRKTLFYTVNLI 257


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/41 (19%), Positives = 19/41 (46%)
 Frame = +2

Query: 299 CKLDSNQTRALSARNVYRQWARRVHAKVSGIVIHCLKLPTF 421
           C L+ N       + + + +++R    + G+V    ++P F
Sbjct: 219 CPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGF 259


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 391 CYPLFKVADLSGWD 432
           C P  K+ADLS  D
Sbjct: 430 CKPKLKIADLSAHD 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,508
Number of Sequences: 438
Number of extensions: 3697
Number of successful extensions: 34
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)