Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1117
         (450 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6KYX7 Cluster: Putative outer membrane protein, probab...    32   6.6  

>UniRef50_A6KYX7 Cluster: Putative outer membrane protein, probably
           involved in nutrient binding; n=4; Bacteroides|Rep:
           Putative outer membrane protein, probably involved in
           nutrient binding - Bacteroides vulgatus (strain ATCC
           8482 / DSM 1447 / NCTC 11154)
          Length = 1133

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 292 NQRVTIKVLTAGQNISFYLVGSWLNRTPILYSX*CFSNLNSA 167
           NQRV + V   G NI +Y+ GS+ N + I  +       NSA
Sbjct: 398 NQRVNLSVTGGGDNIKYYVSGSFYNESSIYKNAGNIYGYNSA 439


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 333,930,294
Number of Sequences: 1657284
Number of extensions: 5087280
Number of successful extensions: 7040
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7040
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)