Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1094
(690 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6YBU8 Cluster: Reverse transcriptase/integrase; n=1; L... 43 0.008
UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera... 40 0.076
UniRef50_A0VWL1 Cluster: Putative uncharacterized protein; n=1; ... 38 0.23
UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori... 38 0.23
UniRef50_Q8DGV6 Cluster: UDP-glucose 4-epimerase; n=1; Synechoco... 36 1.2
UniRef50_A6S686 Cluster: Putative uncharacterized protein; n=1; ... 35 1.6
UniRef50_Q8GBX4 Cluster: Polyketide synthase; n=2; Sorangium cel... 34 3.8
UniRef50_Q868S6 Cluster: Reverse transcriptase; n=2; Culicidae|R... 34 3.8
UniRef50_UPI00003E5E47 Cluster: PREDICTED: hypothetical protein;... 33 8.7
UniRef50_A7RRX0 Cluster: Predicted protein; n=1; Nematostella ve... 33 8.7
UniRef50_A2BKP3 Cluster: Putative uncharacterized protein; n=1; ... 33 8.7
>UniRef50_Q6YBU8 Cluster: Reverse transcriptase/integrase; n=1;
Lymantria dispar|Rep: Reverse transcriptase/integrase -
Lymantria dispar (Gypsy moth)
Length = 136
Score = 42.7 bits (96), Expect = 0.008
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 476 LWKVCRRKSHSGCHQCKHLDDDPQHALGSCPRWEHSRRDLSSAGGS 613
L K+ RR+S CH C +D QH L C WE RR+L + G+
Sbjct: 29 LHKIVRRESTPFCHHCSCDEDTAQHTLEECAAWEGERRELVAIIGA 74
>UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera|Rep:
Reverse transcriptase - Papilio xuthus
Length = 1053
Score = 39.5 bits (88), Expect = 0.076
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 494 RKSHSGCHQCKHLDDDP-QHALGSCPRWEHSRRDLSSAGG 610
R+ + CH C +D QH L CP W RRDL +A G
Sbjct: 948 REPSAVCHHCDDCPEDTAQHTLAECPAWTEQRRDLVAAVG 987
>UniRef50_A0VWL1 Cluster: Putative uncharacterized protein; n=1;
Dinoroseobacter shibae DFL 12|Rep: Putative
uncharacterized protein - Dinoroseobacter shibae DFL 12
Length = 814
Score = 37.9 bits (84), Expect = 0.23
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -2
Query: 683 HKTLARXPTELWSSKDAGDDSLQDFPPHC*DLAA-SAPNAGMIRARAEGHHPDACTGGSP 507
H +AR P + ++DA D + QD P D AA +AP RARAE P A G P
Sbjct: 280 HDGVARKPAKKDDTRDAADTAPQDPPDAPADRAAPTAPGPEPARARAEATAPRAAFGTGP 339
Query: 506 NVTFSCRPSTGL 471
+ P TG+
Sbjct: 340 DPKDKA-PGTGI 350
>UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori|Rep:
Reverse transcriptase - Bombyx mori (Silk moth)
Length = 1076
Score = 37.9 bits (84), Expect = 0.23
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 512 CHQCKHLDDDPQHALGSCPRWEHSRRDLSSAGG---SLAGCHRLHLWRTRARWXAWPGFC 682
CH C H D +H L CP WE RR L + G SL G L + W A FC
Sbjct: 977 CHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGSDES-WKAMLDFC 1035
Query: 683 D 685
+
Sbjct: 1036 E 1036
>UniRef50_Q8DGV6 Cluster: UDP-glucose 4-epimerase; n=1;
Synechococcus elongatus|Rep: UDP-glucose 4-epimerase -
Synechococcus elongatus (Thermosynechococcus elongatus)
Length = 308
Score = 35.5 bits (78), Expect = 1.2
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -1
Query: 582 ECSQRGHDPSAC*GSS--SRCLHWWQPECDFLLQTFHRSWTWT*QRQH 445
E +R DP+ +S +RCL WQP+ + Q H +W W QR+H
Sbjct: 254 EGDRRAGDPAILVANSDRARCLLGWQPQYPDIEQIIHHAWQWH-QRRH 300
>UniRef50_A6S686 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 283
Score = 35.1 bits (77), Expect = 1.6
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 497 KSHSGCHQCKHLDDDPQHALGSCPRWEHSRRDLSSAGGS 613
K G H H D+D L PR H R+LS++GGS
Sbjct: 242 KRDPGSHSTSHFDNDYHRDLRDTPRIVHDDRELSASGGS 280
>UniRef50_Q8GBX4 Cluster: Polyketide synthase; n=2; Sorangium
cellulosum|Rep: Polyketide synthase - Polyangium
cellulosum (Sorangium cellulosum)
Length = 3579
Score = 33.9 bits (74), Expect = 3.8
Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = -2
Query: 668 RXPTELWSSKDAGDDSLQDFPPH-C*DLAASAPNAGMIRARA-EGHHPDACTGGSPNVTF 495
R P ELW +AG D++ FP + DL A AP A + A EG P F
Sbjct: 1843 RTPEELWQLLEAGRDAISGFPTNRGWDLDARAPIAPSAASPAREGGFLLDADRFDPGF-F 1901
Query: 494 SCRPSTGLGLGPNKDSIPIVISIDWYLSAVSWEFIQPARLYKS 366
S P L + P + I++ I W A+ I+PA L S
Sbjct: 1902 SISPREALDMDPQQ---RILLEIAW--EAIERAAIEPASLQGS 1939
>UniRef50_Q868S6 Cluster: Reverse transcriptase; n=2; Culicidae|Rep:
Reverse transcriptase - Anopheles gambiae (African
malaria mosquito)
Length = 1049
Score = 33.9 bits (74), Expect = 3.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 494 RKSHSGCHQCKHLDDDPQHALGSCPRWEHSRRDLSSAGGSLAGCHRL 634
R S S C CK D+ H + CPR+ R L+ + GC L
Sbjct: 965 RASSSRCPACKDEDETVDHVMFHCPRFAEERLQLNESCRVEVGCSNL 1011
>UniRef50_UPI00003E5E47 Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 101
Score = 32.7 bits (71), Expect = 8.7
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = -2
Query: 392 IQPARLYKSLDCQLFKRLQNRVLGSESQQHKGKLYNIKQPKRADRFRVLLTYYWDW 225
I AR CQL L+ G + Q +GK KQP + RVL +W+W
Sbjct: 34 IDLARAAPHCACQLSHALRLSTAGRQGQTSRGKR---KQPAQTGTARVLFDQHWNW 86
>UniRef50_A7RRX0 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 592
Score = 32.7 bits (71), Expect = 8.7
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 447 AVFVRSKSKTCGRSAGESHIRAATSASIWMMTLSTRSDHARVGSTRGEISAVRGE 611
AV +R K+K+CG S + +ATS S T + AR+ + RGE S + +
Sbjct: 97 AVVLRKKTKSCGDVESTSSVSSATSTS---RTSPSEEVLARIQTARGEASTLNND 148
>UniRef50_A2BKP3 Cluster: Putative uncharacterized protein; n=1;
Hyperthermus butylicus DSM 5456|Rep: Putative
uncharacterized protein - Hyperthermus butylicus (strain
DSM 5456 / JCM 9403)
Length = 144
Score = 32.7 bits (71), Expect = 8.7
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +3
Query: 417 IPVYRNHNGNAVFVRSKSKTCGRSAGESHIRAATS-ASIWMMTLSTR---SDHARVG 575
I V HNG V S S+ GR+A + R A S A W L +R DH G
Sbjct: 88 IAVKEKHNGARCVVHSSSQAAGRTASQQRPRPAESCAEAWRQGLQSRGVPGDHKGAG 144
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,692,671
Number of Sequences: 1657284
Number of extensions: 13557969
Number of successful extensions: 32712
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 31344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32704
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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