Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1089
         (515 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1SCD3 Cluster: Phage integrase family protein; n=1; No...    34   2.2  
UniRef50_Q59QR4 Cluster: Putative uncharacterized protein; n=2; ...    32   8.9  

>UniRef50_A1SCD3 Cluster: Phage integrase family protein; n=1;
           Nocardioides sp. JS614|Rep: Phage integrase family
           protein - Nocardioides sp. (strain BAA-499 / JS614)
          Length = 707

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = -1

Query: 179 NGDLHRKTGTFMYWLDSPKM*VGDRYDGSSASPPEPRSLIGRVHRVQERLALAQ*VLGR 3
           NG++ R  G+F+ W+++       R DG  A PP+P    GR++ ++ R  LA  ++ R
Sbjct: 455 NGEITRDLGSFIAWVNA----TFHRLDGQPAIPPDP---AGRIYPIRFRRTLAYFIVRR 506


>UniRef50_Q59QR4 Cluster: Putative uncharacterized protein; n=2;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 291

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 100 SYRSPTYILGESSQYIKVPVLRCKSPL 180
           SY SPTY   ESS Y +VP+ R  +P+
Sbjct: 29  SYPSPTYSFEESSDYYRVPIGRPTTPV 55


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 459,579,919
Number of Sequences: 1657284
Number of extensions: 8331724
Number of successful extensions: 17986
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17975
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)