Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1010
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33670.1 68417.m04783 L-galactose dehydrogenase (L-GalDH) ide...    42   5e-04
At1g60680.1 68414.m06831 aldo/keto reductase family protein cont...    29   2.2  
At1g60690.1 68414.m06832 aldo/keto reductase family protein cont...    29   3.0  
At1g10660.4 68414.m01211 expressed protein                             28   6.8  
At1g10660.3 68414.m01210 expressed protein                             28   6.8  
At1g10660.2 68414.m01209 expressed protein                             28   6.8  
At1g10660.1 68414.m01208 expressed protein                             28   6.8  
At3g50780.1 68416.m05561 expressed protein                             27   9.0  

>At4g33670.1 68417.m04783 L-galactose dehydrogenase (L-GalDH)
           identical to L-galactose dehydrogenase [Arabidopsis
           thaliana] GI:16555790; similar to L-fucose dehydrogenase
           [Pseudomonas sp.] GI:829054; contains Pfam profile
           PF00248: oxidoreductase, aldo/keto reductase family
          Length = 319

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 132 EAWXSLKESLNLGIXYLETGPWYGQGSSEKVIGKAL--FGVPRDSYYI 269
           +A  +++E+  LGI + +T P+YG   SEK++GK L    VPR  Y +
Sbjct: 37  DAVATVREAFRLGINFFDTSPYYGGTLSEKMLGKGLKALQVPRSDYIV 84



 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 422 TLRYVLKETLPXXEQAXRDGKARFIGIADYDIDLMXEXVXE-SXVXISTILSY 577
           +L  ++ ET+P  ++  ++GK RFIGI    +D+    +       +  ILSY
Sbjct: 130 SLDQIVSETIPALQKLKQEGKTRFIGITGLPLDIFTYVLDRVPPGTVDVILSY 182


>At1g60680.1 68414.m06831 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 346

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 147 LKESLNLGIXYLETGPWYGQGSSEKVIGKAL 239
           L  ++N G+ + +T   YG  ++E ++GKAL
Sbjct: 46  LHHAINSGVTFFDTSDMYGPETNELLLGKAL 76


>At1g60690.1 68414.m06832 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 345

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 132 EAWXSLKESLNLGIXYLETGPWYGQGSSEKVIGKAL 239
           EA   +  +++ G+ +L+T   YG  ++E ++GKAL
Sbjct: 41  EAIALIHHAIHSGVTFLDTSDMYGPETNEILLGKAL 76


>At1g10660.4 68414.m01211 expressed protein
          Length = 320

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +3

Query: 54  PXSKFAHIXCWKCRFXQYLWEI*RAKEAWXSLKESLNLGIXYLETGPWY 200
           P  + A+   W C F  Y W I   K  W    + L+L   Y     WY
Sbjct: 244 PLFRIAYFVLWSCIFVAYQWIIHAVKNLWWPY-QFLDLSSPYAPL--WY 289


>At1g10660.3 68414.m01210 expressed protein
          Length = 320

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +3

Query: 54  PXSKFAHIXCWKCRFXQYLWEI*RAKEAWXSLKESLNLGIXYLETGPWY 200
           P  + A+   W C F  Y W I   K  W    + L+L   Y     WY
Sbjct: 244 PLFRIAYFVLWSCIFVAYQWIIHAVKNLWWPY-QFLDLSSPYAPL--WY 289


>At1g10660.2 68414.m01209 expressed protein
          Length = 320

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +3

Query: 54  PXSKFAHIXCWKCRFXQYLWEI*RAKEAWXSLKESLNLGIXYLETGPWY 200
           P  + A+   W C F  Y W I   K  W    + L+L   Y     WY
Sbjct: 244 PLFRIAYFVLWSCIFVAYQWIIHAVKNLWWPY-QFLDLSSPYAPL--WY 289


>At1g10660.1 68414.m01208 expressed protein
          Length = 320

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +3

Query: 54  PXSKFAHIXCWKCRFXQYLWEI*RAKEAWXSLKESLNLGIXYLETGPWY 200
           P  + A+   W C F  Y W I   K  W    + L+L   Y     WY
Sbjct: 244 PLFRIAYFVLWSCIFVAYQWIIHAVKNLWWPY-QFLDLSSPYAPL--WY 289


>At3g50780.1 68416.m05561 expressed protein 
          Length = 520

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 171 IXYLETGPWYGQGSSEKVIGKAL 239
           + YLE  PW G+   EKVI   L
Sbjct: 224 LDYLEAVPWVGEEEEEKVISSIL 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,898,689
Number of Sequences: 28952
Number of extensions: 165362
Number of successful extensions: 329
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)