Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0885
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55000.2 68418.m06850 potassium channel tetramerisation domai... 79 4e-15
At5g55000.1 68418.m06849 potassium channel tetramerisation domai... 79 4e-15
At3g09030.1 68416.m01059 potassium channel tetramerisation domai... 42 3e-04
At5g41330.1 68418.m05023 potassium channel tetramerisation domai... 34 0.12
At3g55880.2 68416.m06210 expressed protein 32 0.35
At3g55880.1 68416.m06209 expressed protein 32 0.35
At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At3g46130.1 68416.m04992 myb family transcription factor (MYB48)... 29 4.4
At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recogniti... 28 5.8
At3g19170.1 68416.m02434 peptidase M16 family protein / insulina... 28 5.8
At1g23790.1 68414.m03001 expressed protein 28 5.8
>At5g55000.2 68418.m06850 potassium channel tetramerisation
domain-containing protein / pentapeptide
repeat-containing protein contains Pfam profiles
PF02214: K+ channel tetramerisation domain, PF00805:
Pentapeptide repeats (8 copies)
Length = 298
Score = 78.6 bits (185), Expect = 4e-15
Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
Frame = +1
Query: 265 SQYVKLNVGGTLFYTTIGTLT--KSDNMLRTMFSGRMEVLTDSE-GWILIDRCGKHFGTI 435
S V+LN+GG F TTI TLT + D+ML MFSGR + +S+ G++ IDR GKHF I
Sbjct: 8 SSMVRLNIGGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQESKKGYVFIDRDGKHFRHI 67
Query: 436 LNYLRDGTV-ALPDSYKEIMELLAEAKYFLIEELTESCLQALAK-KEREAEPICRVPLIT 609
LN+LRDG + +L D + ELL EA Y+ + L + + + E EAE + R+ +I
Sbjct: 68 LNWLRDGVIPSLSD--PDCSELLREADYYQLLGLKDGIKDSRKEVGEVEAE-LTRIDIIK 124
Query: 610 SQKEEQL 630
+ E++
Sbjct: 125 CIQTERV 131
>At5g55000.1 68418.m06849 potassium channel tetramerisation
domain-containing protein / pentapeptide
repeat-containing protein contains Pfam profiles
PF02214: K+ channel tetramerisation domain, PF00805:
Pentapeptide repeats (8 copies)
Length = 290
Score = 78.6 bits (185), Expect = 4e-15
Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
Frame = +1
Query: 265 SQYVKLNVGGTLFYTTIGTLT--KSDNMLRTMFSGRMEVLTDSE-GWILIDRCGKHFGTI 435
S V+LN+GG F TTI TLT + D+ML MFSGR + +S+ G++ IDR GKHF I
Sbjct: 8 SSMVRLNIGGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQESKKGYVFIDRDGKHFRHI 67
Query: 436 LNYLRDGTV-ALPDSYKEIMELLAEAKYFLIEELTESCLQALAK-KEREAEPICRVPLIT 609
LN+LRDG + +L D + ELL EA Y+ + L + + + E EAE + R+ +I
Sbjct: 68 LNWLRDGVIPSLSD--PDCSELLREADYYQLLGLKDGIKDSRKEVGEVEAE-LTRIDIIK 124
Query: 610 SQKEEQL 630
+ E++
Sbjct: 125 CIQTERV 131
>At3g09030.1 68416.m01059 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 460
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = +1
Query: 274 VKLNVGGTLFYTTIGTLTKS--DNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNYL 447
VKLNVGG +F T T+ S D++L + + + + IDR + F ILN L
Sbjct: 10 VKLNVGGEIFETNASTIQSSCPDSLLAALSTS----TSHGSNPVFIDRDPEIFAVILNLL 65
Query: 448 RDGTV-ALPDSYKEIMELLAEAKYFLIEEL 534
R G + A ELL EA Y+ +E L
Sbjct: 66 RTGRLPANSSGVFSKQELLDEAMYYGVESL 95
>At5g41330.1 68418.m05023 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 458
Score = 33.9 bits (74), Expect = 0.12
Identities = 25/88 (28%), Positives = 46/88 (52%)
Frame = +1
Query: 265 SQYVKLNVGGTLFYTTIGTLTKSDNMLRTMFSGRMEVLTDSEGWILIDRCGKHFGTILNY 444
S V +NVGG +F TT TL+ + ++ S ++ T++ ++ DR F +L
Sbjct: 10 SNVVSINVGGRIFQTTKQTLSLAGT--DSLLS---QLATETTRFV--DRDPDLFSVLLYI 62
Query: 445 LRDGTVALPDSYKEIMELLAEAKYFLIE 528
LR G + ++ +L+ E++Y+ IE
Sbjct: 63 LRTGNLPARSRAFDVRDLIDESRYYGIE 90
>At3g55880.2 68416.m06210 expressed protein
Length = 215
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 226 LFQNEEITSTR*YETTSTPGLSTIF-LFQMYLYYILCS 116
L EEI+ TR Y ++ G+ TIF LF M+L +I+ S
Sbjct: 3 LISKEEISKTRRYSSSLWRGIKTIFVLFTMFLSFIIFS 40
>At3g55880.1 68416.m06209 expressed protein
Length = 198
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 226 LFQNEEITSTR*YETTSTPGLSTIF-LFQMYLYYILCS 116
L EEI+ TR Y ++ G+ TIF LF M+L +I+ S
Sbjct: 3 LISKEEISKTRRYSSSLWRGIKTIFVLFTMFLSFIIFS 40
>At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 226
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/76 (28%), Positives = 30/76 (39%)
Frame = +1
Query: 367 MEVLTDSEGWILIDRCGKHFGTILNYLRDGTVALPDSYKEIMELLAEAKYFLIEELTESC 546
++V D E W+ ID C K GT L D + L E+ ++ K C
Sbjct: 145 VDVKVDVEQWVRIDCCCKQKGTCLVPALDCPICL----TELSSGVSRMKLPCSHVFHRDC 200
Query: 547 LQALAKKEREAEPICR 594
+ KK PICR
Sbjct: 201 IMTWLKKNPSC-PICR 215
>At3g46130.1 68416.m04992 myb family transcription factor (MYB48)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 256
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 231 RHYFKTKK*HQRDNTKRPVHPDSQLFSCSKCTYTT 127
++Y++T + KRPV P S +CS + TT
Sbjct: 100 KNYWRTHMRKKAQEKKRPVSPTSSFSNCSSSSVTT 134
>At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein contains Pfam profile
PF02493: MORN repeat
Length = 871
Score = 28.3 bits (60), Expect = 5.8
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +1
Query: 499 LAEAKYFLIEELTESCLQALAKKEREAEPICRVPLITSQKEEQLLIMSTSKPVV----KL 666
L EA+ L EE E + L KKE+E E + L T + E+ L+ + + VV K+
Sbjct: 615 LVEAEICL-EEAIEDMDEELKKKEQEEEKKTEMGL-TEEDEDVLVPVYKEEKVVTAKEKI 672
Query: 667 LINRHNNKYSYTSTSDDN 720
N+ KY DD+
Sbjct: 673 QENKQEEKYKDDDDEDDD 690
>At3g19170.1 68416.m02434 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 679 HNNKYSYTSTSDDNLLKNIELFD 747
H+ +SY S D NLLK ++++D
Sbjct: 948 HSGVFSYLSYRDPNLLKTLDIYD 970
>At1g23790.1 68414.m03001 expressed protein
Length = 518
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -1
Query: 204 HQRDNTKRPVHP 169
H DNTKRPVHP
Sbjct: 491 HSADNTKRPVHP 502
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,983
Number of Sequences: 28952
Number of extensions: 305247
Number of successful extensions: 782
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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