Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0884
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    27   0.11 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.4  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   4.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   4.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.5  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   7.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   9.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.7  

>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 237 SILSKFCPNLCTMFWSNLSILCPKRWAKFKSIVWPNR 127
           S +  +C  L   F S L ++   R+ + K+ +W NR
Sbjct: 136 SFIENYCQFLYNCFHSTLLLMILSRYQRLKAQLWQNR 172


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 302 QQRLENEHIIPMQFHIKSEQEDDSYFYENPGQSLD 406
           ++RLEN   + ++   +   ED+  F+ N  +  D
Sbjct: 873 EERLENHTSVKIKREAEDRDEDERSFHSNGAKEED 907


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 204 YIDWDKIWIGLTRVLYR 254
           Y DW ++W+   +V Y+
Sbjct: 291 YSDWTRVWLDDAQVPYK 307


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/40 (25%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 2   LDQELMQAESRRIPVQDNQIID-HNLTQRWTQNMERLDQS 118
           LD + ++ +   +   D  +++ +NL++ +TQN+  +D+S
Sbjct: 483 LDNQQLELKPIDLNSGDLSMLETNNLSETFTQNLSLMDES 522


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 162 WAKFKSIVWPNR*AILWSSLSI 97
           WA+FK+++W +  A+    L I
Sbjct: 394 WAQFKAVLWRSILAVFKEPLLI 415


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 162 WAKFKSIVWPNR*AILWSSLSI 97
           WA+FK+++W +  A+    L I
Sbjct: 394 WAQFKAVLWRSILAVFKEPLLI 415


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 86  WTQNMERLDQSIAQRLGQTIDLNLAQR 166
           WT NMER+ ++ A R   T+    A++
Sbjct: 595 WTANMERIMKAQALRDTSTMGYMAAKK 621


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -1

Query: 385 FIKVTVIFLFGFNVELHRYYVFILQPLLTSILTHQSLIYGLPQPLY 248
           F+  T  F + F + L  YY +    + T  L     IY    PL+
Sbjct: 96  FLLCTYYFYYAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLF 141


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 10  GVNAGGIQTHSGPGQSNNRSQSYSKMDSE 96
           G+N   +Q   GP  S  R Q  S   +E
Sbjct: 104 GMNKDAVQHERGPRNSTLRRQQMSSYYNE 132


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 10  GVNAGGIQTHSGPGQSNNRSQSYSKMDSE 96
           G+N   +Q   GP  S  R Q  S   +E
Sbjct: 104 GMNKDAVQHERGPRNSTLRRQQMSSYYNE 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,993
Number of Sequences: 336
Number of extensions: 3819
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)