Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0884
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35497| Best HMM Match : PT (HMM E-Value=0.64) 45 5e-05
SB_14656| Best HMM Match : LEA_4 (HMM E-Value=7.3) 42 4e-04
SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8) 41 8e-04
SB_39937| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_53200| Best HMM Match : Apolipoprotein (HMM E-Value=0.0069) 38 0.008
SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05) 37 0.014
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096
SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10) 30 2.1
SB_4963| Best HMM Match : TP2 (HMM E-Value=3.3) 30 2.1
SB_25264| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_44255| Best HMM Match : RVT_1 (HMM E-Value=7.6e-29) 29 3.6
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29) 29 3.6
SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7) 29 4.8
SB_7193| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32) 28 6.3
SB_14513| Best HMM Match : rve (HMM E-Value=0.14) 28 6.3
SB_8472| Best HMM Match : TatC (HMM E-Value=1.4) 28 6.3
SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 8.4
SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11) 28 8.4
SB_14194| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_35497| Best HMM Match : PT (HMM E-Value=0.64)
Length = 187
Score = 45.2 bits (102), Expect = 5e-05
Identities = 27/114 (23%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Frame = +2
Query: 2 LDQELMQAESRRIPVQDNQIIDHNLTQRWTQNMER-LDQSIAQRLGQTIDLNLAQRLGQS 178
+ Q + Q+ S+ + +Q + +++Q +Q++ + + QS++Q + Q++ +++Q + QS
Sbjct: 45 VSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQS 104
Query: 179 I-ERLDQNIVHRLGQNLDR-IDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIP 334
+ + + Q++ + Q++ + + QSV Q + Q+V Q V Q Q R + P
Sbjct: 105 VSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQS-VSQSVSQPRDSQAPLAP 157
Score = 35.5 bits (78), Expect = 0.042
Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +2
Query: 101 ERLDQSIAQRLGQTIDLNLAQRLGQSI-ERLDQNIVHRLGQNLDR-IDQSVVQRLGQTVD 274
+ + QS++Q + Q++ +++Q + QS+ + + Q++ + Q++ + + QSV Q + Q+V
Sbjct: 35 QSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVS 94
Query: 275 QRLVGQDAGQ 304
Q V Q Q
Sbjct: 95 QS-VSQSVSQ 103
>SB_14656| Best HMM Match : LEA_4 (HMM E-Value=7.3)
Length = 166
Score = 42.3 bits (95), Expect = 4e-04
Identities = 28/132 (21%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Frame = +2
Query: 2 LDQELMQAESRRIPVQDNQIIDHNLTQRWTQNMER-LDQSIAQRLGQTIDLNLAQRLGQS 178
+ Q + Q+ S+ + +Q + +++Q +Q++ + + QS++Q + Q++ +++Q + QS
Sbjct: 14 VSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQS 73
Query: 179 I-ERLDQNIVHRLGQNLDR-IDQSVVQRLGQTVDQRL---VGQDAGQQRLENEHIIPMQF 343
+ + + Q++ + Q++ + + QSV Q + Q+V Q + V Q Q ++ + ++
Sbjct: 74 VSQSVSQSVSQSVSQSVSQSVSQSVRQSVSQSVRQSVSQSVSQSFSQSVSQSVTTLHIRL 133
Query: 344 HIKSEQEDDSYF 379
++ E D + F
Sbjct: 134 NVILELRDANRF 145
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/70 (28%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +2
Query: 101 ERLDQSIAQRLGQTIDLNLAQRLGQSI-ERLDQNIVHRLGQNLDR-IDQSVVQRLGQTVD 274
E +QS++Q + Q++ +++Q + QS+ + + Q++ + Q++ + + QSV Q + Q+V
Sbjct: 4 ELTNQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVS 63
Query: 275 QRLVGQDAGQ 304
Q V Q Q
Sbjct: 64 QS-VSQSVSQ 72
>SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)
Length = 213
Score = 41.1 bits (92), Expect = 8e-04
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Frame = +2
Query: 80 QRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSI-ERLDQNIVHRLGQNLDR-IDQSVVQ 253
Q W N E QS++Q + Q++ +++Q + QS+ + + Q++ + Q++ + + QSV Q
Sbjct: 6 QVWQANGEGCYQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQ 65
Query: 254 RLGQTVDQRL---VGQDAG--QQRLENEHIIPMQFH 346
+ Q+V Q + V Q Q + N H +H
Sbjct: 66 SVSQSVSQSVSQSVSQSVSPVSQSVSNNHNTKSSYH 101
>SB_39937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +2
Query: 77 TQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSI-ERLDQNIVHRLGQNLDR-IDQSVV 250
T RWT + + Q + Q +GQ + + Q +GQ + + Q + +GQ + + + Q V
Sbjct: 191 TGRWTGHGTGMGQGVGQGMGQGVGQGMGQGMGQGVGQGTGQGVGQGVGQGVGQGVGQGVG 250
Query: 251 QRLGQTVDQRLVGQDAGQ 304
Q +GQ Q VGQ GQ
Sbjct: 251 QGVGQGTGQG-VGQGMGQ 267
Score = 34.3 bits (75), Expect = 0.096
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 113 QSIAQRLGQTIDLNLAQRLGQSI-ERLDQNIVHRLGQNLDR-IDQSVVQRLGQTVDQRLV 286
Q + Q +GQ + + Q +GQ + + + Q + +GQ + + + Q V Q +GQ + Q V
Sbjct: 83 QGVGQGMGQGVGQGVGQGMGQGVGQGVGQGVGQGMGQGMGQGVGQGVGQGVGQGMGQG-V 141
Query: 287 GQDAGQ 304
GQ GQ
Sbjct: 142 GQGMGQ 147
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 107 LDQSIAQRLGQTIDLNLAQRLGQSI-ERLDQNIVHRLGQNLDR-IDQSVVQRLGQTVDQR 280
+ Q + Q +GQ + + Q +GQ + + + Q + GQ + + + Q V Q GQ V Q
Sbjct: 25 MGQGVGQGVGQGVGQGVGQGVGQGVGQGVGQGVGQGTGQGMGQGVGQGVGQGTGQGVGQG 84
Query: 281 LVGQDAGQ 304
VGQ GQ
Sbjct: 85 -VGQGMGQ 91
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 113 QSIAQRLGQTIDLNLAQRLGQSI-ERLDQNIVHRLGQNLDR-IDQSVVQRLGQTVDQRLV 286
Q + Q +GQ + + Q +GQ + + + Q + +GQ + + + Q V Q +GQ Q +
Sbjct: 7 QGVGQGVGQGVGQGMGQGMGQGVGQGVGQGVGQGVGQGVGQGVGQGVGQGVGQGTGQGM- 65
Query: 287 GQDAGQ 304
GQ GQ
Sbjct: 66 GQGVGQ 71
Score = 31.9 bits (69), Expect = 0.51
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 107 LDQSIAQRLGQTIDLNLAQRLGQSI-ERLDQNIVHRLGQNLDR-IDQSVVQRLGQTVDQR 280
+ Q + Q +GQ + + Q +GQ + + + Q + +GQ + + + Q V Q +GQ V Q
Sbjct: 101 MGQGVGQGVGQGVGQGMGQGMGQGVGQGVGQGVGQGMGQGVGQGMGQGVGQGMGQGVGQG 160
Query: 281 LVGQDAG 301
+ GQ G
Sbjct: 161 M-GQGHG 166
Score = 31.1 bits (67), Expect = 0.90
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 113 QSIAQRLGQTIDLNLAQRLGQSIERLDQNIVHRLGQNLDR-IDQSVVQRLGQTVDQRLVG 289
Q + Q +GQ + + Q +GQ + Q + +GQ + + + Q + Q +GQ V Q + G
Sbjct: 259 QGVGQGMGQGVGQGVGQGMGQGV---GQGMGQGVGQGMRQGVGQGMRQGMGQGVGQSM-G 314
Query: 290 QDAGQ 304
Q GQ
Sbjct: 315 QGVGQ 319
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 107 LDQSIAQRLGQTIDLNLAQRLGQSIER-LDQNIVHRLGQNLDRIDQSVVQRLGQTVDQRL 283
+ Q + Q +GQ + + Q +GQ + + + Q + +GQ + Q V Q +GQ V +
Sbjct: 277 MGQGVGQGMGQGVGQGMRQGVGQGMRQGMGQGVGQSMGQG---VGQGVGQGMGQGVKEEQ 333
Query: 284 V 286
V
Sbjct: 334 V 334
>SB_53200| Best HMM Match : Apolipoprotein (HMM E-Value=0.0069)
Length = 246
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/73 (30%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Frame = +2
Query: 74 LTQRWTQNMERLDQSIAQRLGQTIDLNL---AQRLGQSIERLDQNIVHRLGQNLDRIDQS 244
L + +++E LD+S+ + L +T+D +L + L +S+E LD+++ L ++L+ +D+S
Sbjct: 155 LDESLDESLETLDESLDESL-ETLDESLDESLETLDESLETLDESLDESLDESLETLDES 213
Query: 245 VVQRLGQTVDQRL 283
+ + L +T+D+ L
Sbjct: 214 LDESL-ETLDESL 225
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/70 (28%), Positives = 44/70 (62%)
Frame = +2
Query: 74 LTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQ 253
L + +++E LD+S+ +T+D +L + L +S+E LD++ L ++L+ +D+S+ +
Sbjct: 177 LDESLDESLETLDESL-----ETLDESLDESLDESLETLDES----LDESLETLDESLDE 227
Query: 254 RLGQTVDQRL 283
L + +D+ L
Sbjct: 228 SL-EILDESL 236
>SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)
Length = 1122
Score = 37.1 bits (82), Expect = 0.014
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 13/110 (11%)
Frame = +2
Query: 17 MQAESRRIPVQDNQI--IDHNLTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSIERL 190
+Q +R+ D ++ +D + Q +R+ Q + ++LGQ + + ++L Q ++ +
Sbjct: 556 VQGVDQRVQGVDQRVQGVDQRVQGVGEQLGQRV-QGVGEQLGQRVQ-GVGEQLRQQVQGV 613
Query: 191 DQNIV---HRLGQNLDRID---QSVVQRLGQT---VDQRL--VGQDAGQQ 307
DQ + +LGQ + +D Q V ++LGQ VDQR+ VG+ GQQ
Sbjct: 614 DQRVQGVGEQLGQQVQGVDQRVQGVGEQLGQQVQGVDQRVQGVGEQLGQQ 663
>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 34.3 bits (75), Expect = 0.096
Identities = 17/75 (22%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 2 LDQELMQAESRRIPVQDNQIIDHNLTQRWTQNMER-LDQSIAQRLGQTIDLNLAQRLGQS 178
+ Q + Q+ S+ + +Q + +++Q +Q++ + + QS++Q Q++ +++Q + QS
Sbjct: 336 VSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQLASQSVSQSVSQSVSQS 395
Query: 179 IERLDQNIVHRLGQN 223
+ + V + GQN
Sbjct: 396 VSQSVSQSVSQPGQN 410
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +2
Query: 101 ERLDQSIAQRLGQTIDLNLAQRLGQSI-ERLDQNIVHRLGQNLDRIDQSVVQRLGQTVDQ 277
+ + QS++Q + Q++ +++Q + QS+ + + Q++ + Q+ + QSV Q + Q+V Q
Sbjct: 322 QSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQS---VSQSVSQSVSQSVSQ 378
Query: 278 RLVGQDAGQ 304
L Q Q
Sbjct: 379 -LASQSVSQ 386
>SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10)
Length = 574
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 218 QNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPMQFHIKSEQEDDSYFYENP 391
QNL+ + +S + Q +++ + ++ L ++ ++ Q K +QE DS YE P
Sbjct: 220 QNLEELQKSDPDKARQELEKLERARAEARKALHDQMLLSRQLTEKPQQESDSEDYEEP 277
>SB_4963| Best HMM Match : TP2 (HMM E-Value=3.3)
Length = 136
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 101 ERLDQSIAQRLGQTIDLNLAQRLGQSI-ERLDQNIVHRLG-QNLDRIDQSVVQRLGQTVD 274
+ + QS++Q + Q++ L+ +Q + QS+ + Q ++H L ++ + Q V+ D
Sbjct: 36 QSVSQSVSQSVSQSVSLSQSQSVSQSVSQSASQPVIHSLSWPVINSVSQVVLYASPSITD 95
Query: 275 QRLVGQD 295
+ G D
Sbjct: 96 ELRAGGD 102
>SB_25264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 269 VDQRLVGQDAGQQRLENEHIIPMQFHIKSEQEDDSYFYE 385
V+Q +G++R N H++P H KS + + ++E
Sbjct: 226 VNQTRTNSQSGKRRYNNSHVVPQMSHKKSAIDAEKDWFE 264
>SB_44255| Best HMM Match : RVT_1 (HMM E-Value=7.6e-29)
Length = 1017
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 191 DQNIVHRLGQNL-DRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHII 331
D+ +V L +NL DR+ Q L Q +++ + G+QR E++H++
Sbjct: 149 DRLVVGVLDENLSDRLQQKADLTLAQAIERCSERYEKGEQREEDKHLL 196
>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
Length = 551
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 98 MERLDQSIAQRLGQTIDLNLAQRLGQSIERLDQNIVHRLGQNLDRIDQSVVQRLGQTVDQ 277
ME++DQ + L Q ++ LA+ + Q E LDQ + ++ Q D Q + +
Sbjct: 459 MEKIDQ---EYLAQLVNQTLAKGMEQGDESLDQEVTYKFLQANDSYLQMAIGNAPWPIGV 515
Query: 278 RLVGQDA--GQQRLENEHI 328
+VG A G++++ +++
Sbjct: 516 TMVGIHARTGREKIFAQNV 534
>SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7)
Length = 434
Score = 28.7 bits (61), Expect = 4.8
Identities = 30/127 (23%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Frame = +2
Query: 5 DQELMQAESRRIPVQDNQIIDHNLTQRWTQNMERLD--QSIAQRLGQTIDLNLAQRLGQS 178
+QELM+ E+RRI ++ ++ +R + E+ + ++ Q+L + I +R
Sbjct: 191 EQELMEEENRRI-LEFARLQQQREEERMEKKKEQEEAMATVQQKLSERIRKEEEER--DE 247
Query: 179 IERLDQNIVHRLGQNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPMQFHIKSE 358
+ER+ + + + +R Q+ Q + + QRL Q+ +Q+LE + + + +E
Sbjct: 248 MERIRLELY--IEEQEERERQNEQQEMENKIRQRLDLQETRRQQLEFK-----ERRLLAE 300
Query: 359 QEDDSYF 379
QE++ F
Sbjct: 301 QEEEEEF 307
>SB_7193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 372
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 418 SVNTIQRLTWIFIKVTVIFLFGFNVELHR-YYVFILQPLLTSILTHQSLIYGLPQPLYNT 242
S+ + LT + + VI F + +L + Y F++ + +LT +++Y + L
Sbjct: 88 SIAVAEGLTIVTANLLVILTFSISTQLRKPSYYFVINLAVADLLTGLAIVYVFAKFLDKR 147
Query: 241 LVNPIQILSQ 212
L IQI ++
Sbjct: 148 LKRKIQIATK 157
>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
Length = 504
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/39 (25%), Positives = 24/39 (61%)
Frame = +2
Query: 5 DQELMQAESRRIPVQDNQIIDHNLTQRWTQNMERLDQSI 121
D+EL++ RIP +++++ +L ++ +E +QS+
Sbjct: 87 DEELVKISQGRIPAFNHEVVPDHLRTKYEPEVEEAEQSL 125
>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
Length = 1101
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 53 NQIIDHNLTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQ 175
NQ++D +W E L SI++ L + +NL RLG+
Sbjct: 524 NQVVDTACQHKWRNLKEVLVPSISRNLTNKLLMNLHVRLGR 564
>SB_8472| Best HMM Match : TatC (HMM E-Value=1.4)
Length = 476
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 302 DQHPDPPVFDLRSAPASVQHSGQSYPNFVPIYVLC 198
D P+PP F + A++++ + YP + VLC
Sbjct: 39 DPEPNPPFFTSYAIKATLEYMTRCYPGETVVSVLC 73
>SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 628
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 299 QHPDPPVF--DLRSAPASVQHSGQSYPNFVPIYVLCFGL 189
+H PP + L++AP S++ +G + P Y LC L
Sbjct: 560 RHSSPPKYGTSLKTAPTSIRKAGDADAVRTPYYFLCLVL 598
>SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11)
Length = 372
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = -1
Query: 418 SVNTI---QRLTWIFIKVTVIFLFGFNVELHR-YYVFILQPLLTSILTHQSLIYGLPQPL 251
S++TI + LT + + VI F + +L + Y F++ + +LT +++Y + L
Sbjct: 85 SISTIAVAEGLTIVTANLLVILTFSISTQLRKPSYYFVINLAVADLLTGLAIVYVFAKFL 144
Query: 250 YNTLVNPIQILSQ 212
L IQI ++
Sbjct: 145 DERLKRKIQIATK 157
>SB_14194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +2
Query: 38 IPVQDNQIIDHNLTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSIERLDQNI--VHR 211
+P Q NQ++D +W E L SI++ L + +++ + L + R + + +
Sbjct: 794 LPEQTNQVVDTACQNKWRNLKEVLVPSISRNLTNKLLMSIIKNLHVRLRRWRRELRAPNH 853
Query: 212 LGQNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEH 325
+L+ +D+ + + + A QR N H
Sbjct: 854 PRPDLNTLDEPKPEGAWRELAAAFTRTPAVNQRATNPH 891
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,707,715
Number of Sequences: 59808
Number of extensions: 443778
Number of successful extensions: 1082
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -