Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0884
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61910.3 68418.m07772 expressed protein                             28   5.2  
At5g61910.2 68418.m07771 expressed protein                             28   5.2  
At5g61910.1 68418.m07770 expressed protein                             28   5.2  
At5g56050.1 68418.m06993 hypothetical protein                          28   5.2  
At5g41090.1 68418.m04995 no apical meristem (NAM) family protein...    28   5.2  
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ...    27   9.0  
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ...    27   9.0  
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp...    27   9.0  

>At5g61910.3 68418.m07772 expressed protein
          Length = 742

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 19  AGGIQTHSGPGQSNNRSQSYSKMDSEYGKAGPEYSSAIRP 138
           AG   THS PG     +QSY+  DS Y +   +Y +A+ P
Sbjct: 469 AGNYSTHSQPGNVEESTQSYAGTDS-YSQ--QQYYAAMGP 505


>At5g61910.2 68418.m07771 expressed protein
          Length = 738

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 19  AGGIQTHSGPGQSNNRSQSYSKMDSEYGKAGPEYSSAIRP 138
           AG   THS PG     +QSY+  DS Y +   +Y +A+ P
Sbjct: 465 AGNYSTHSQPGNVEESTQSYAGTDS-YSQ--QQYYAAMGP 501


>At5g61910.1 68418.m07770 expressed protein
          Length = 738

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 19  AGGIQTHSGPGQSNNRSQSYSKMDSEYGKAGPEYSSAIRP 138
           AG   THS PG     +QSY+  DS Y +   +Y +A+ P
Sbjct: 465 AGNYSTHSQPGNVEESTQSYAGTDS-YSQ--QQYYAAMGP 501


>At5g56050.1 68418.m06993 hypothetical protein 
          Length = 283

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 351 NPNKKMTVTFMKIQVNLWIVLT 416
           NPNKK+ V F  + V LW   T
Sbjct: 165 NPNKKLNVRFENLMVELWFADT 186


>At5g41090.1 68418.m04995 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to unknown protein (emb|CAB88055.1)
          Length = 212

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 317 NEHIIPMQFHIKSEQEDDSYFYENPGQSLDSVNGLSG 427
           N HI+  +   + E+ED+S   + P +SLDSV    G
Sbjct: 168 NLHIVESESESEEEEEDESV--DKPAESLDSVKEKDG 202


>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 765

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 26/122 (21%), Positives = 50/122 (40%)
 Frame = +2

Query: 2   LDQELMQAESRRIPVQDNQIIDHNLTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSI 181
           +++EL  A+ R   +++       L  R    +E  D+ I++ + +  +L  +    + +
Sbjct: 562 IEKELENAKLRNKRMKEEHESVRELADRL---IEEKDREISRLVDEMTNLRKSME-SKPV 617

Query: 182 ERLDQNIVHRLGQNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPMQFHIKSEQ 361
                + VH  G N     Q  V  L  +  +  +   A QQ    E +   Q HI + Q
Sbjct: 618 WNKSPSQVHHYGNNNTESQQQDVSNLSTSAAEHQILILARQQAQREEELAQTQRHILALQ 677

Query: 362 ED 367
           E+
Sbjct: 678 EE 679


>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 788

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 26/122 (21%), Positives = 50/122 (40%)
 Frame = +2

Query: 2   LDQELMQAESRRIPVQDNQIIDHNLTQRWTQNMERLDQSIAQRLGQTIDLNLAQRLGQSI 181
           +++EL  A+ R   +++       L  R    +E  D+ I++ + +  +L  +    + +
Sbjct: 562 IEKELENAKLRNKRMKEEHESVRELADRL---IEEKDREISRLVDEMTNLRKSME-SKPV 617

Query: 182 ERLDQNIVHRLGQNLDRIDQSVVQRLGQTVDQRLVGQDAGQQRLENEHIIPMQFHIKSEQ 361
                + VH  G N     Q  V  L  +  +  +   A QQ    E +   Q HI + Q
Sbjct: 618 WNKSPSQVHHYGNNNTESQQQDVSNLSTSAAEHQILILARQQAQREEELAQTQRHILALQ 677

Query: 362 ED 367
           E+
Sbjct: 678 EE 679


>At4g29140.1 68417.m04170 MATE efflux protein-related several
           hypothetical proteins - Arabidopsis thaliana; contains
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 532

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = -1

Query: 409 TIQRLTWIFIKVTVIFLFGFNVELHRYYVFILQPLLTSILTHQSLIYGLPQPLYNTLVNP 230
           T+ R T +F+ V  + +      + +  V++ Q    + L    LI+ LP  L NTL++P
Sbjct: 137 TLHR-TVVFLLVCCVPISVLWFNVGKISVYLHQDPDIAKLAQTYLIFSLPDLLTNTLLHP 195

Query: 229 IQI 221
           I+I
Sbjct: 196 IRI 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,786,638
Number of Sequences: 28952
Number of extensions: 322285
Number of successful extensions: 816
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)