Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0883
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   1.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   1.8  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   2.4  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   4.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.5  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   7.3  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 108 KAIPFKRHVISYLSYCIAFIAGFERGYRIKK 16
           KA+PF    +++ S        FER Y I K
Sbjct: 144 KAVPFVELTVAHASVLTILAISFERYYAICK 174


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 108 KAIPFKRHVISYLSYCIAFIAGFERGYRIKK 16
           KA+PF    +++ S        FER Y I K
Sbjct: 144 KAVPFVELTVAHASVLTILAISFERYYAICK 174


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/32 (21%), Positives = 20/32 (62%)
 Frame = -3

Query: 281 YIIVVFLISSLFYMSFRSPLIAYRATVITIRI 186
           Y+++++++ SL YM  +  ++ +   +  I+I
Sbjct: 270 YVLILYILESLLYMVTKLVVVTFLKFIKKIQI 301


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 115 PRYK*I*SPNFRNESDLPRSKAALMRIVITVAR 213
           P+++ + SP+  + S  PRS  +L + V  ++R
Sbjct: 277 PQHQVLQSPSSTSSSPEPRSPESLFKPVTVISR 309


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +2

Query: 305  ITNHDLPF*FDIEYF*LELNV*VIRAVIRL-----LKLLYLLFVSTIGQINSV 448
            I  H L   F I +  +   +  +  V++L     L+L YL+FVST+   N V
Sbjct: 871  IFGHGLLLMFGISFLLVTQTIFALCVVLQLQENDWLQLGYLIFVSTLYTANVV 923


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 551 SLHTHMLRLNVFYHSHIDHTMTKT 480
           S+H+H    N +Y+S + HT   T
Sbjct: 405 SVHSHSTIGNDYYNSPLYHTSAGT 428


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,313
Number of Sequences: 336
Number of extensions: 2954
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)