Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0881
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IE94 Cluster: Putative uncharacterized protein MAL13P...    34   2.9  
UniRef50_Q8I3F7 Cluster: Putative uncharacterized protein PFE155...    34   3.9  
UniRef50_A5K948 Cluster: Putative uncharacterized protein; n=4; ...    33   5.1  
UniRef50_A3DH91 Cluster: Periplasmic sensor signal transduction ...    33   6.7  
UniRef50_Q6LF65 Cluster: Putative uncharacterized protein; n=2; ...    33   8.9  
UniRef50_A0CXD5 Cluster: Chromosome undetermined scaffold_30, wh...    33   8.9  

>UniRef50_Q8IE94 Cluster: Putative uncharacterized protein
            MAL13P1.123; n=2; Plasmodium|Rep: Putative
            uncharacterized protein MAL13P1.123 - Plasmodium
            falciparum (isolate 3D7)
          Length = 1937

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = -2

Query: 522  NTILKKLFYDIIF-FIGYCHIQYLLNN*CVSL*FY-ILNFYIAIH-KRIAQKKNNKLCSL 352
            N +L    YDI + FI   + QY L N   +  FY +LN  I+++ +++  KK N LC+ 
Sbjct: 884  NVVLNNAIYDIFYEFIDIAY-QYNLKN---NTSFYKMLNILISLYIEKVTDKKGNMLCNN 939

Query: 351  INSK*IFIIDDNFI 310
               K     D+N I
Sbjct: 940  FLHKCFMYFDNNII 953


>UniRef50_Q8I3F7 Cluster: Putative uncharacterized protein PFE1555c;
            n=2; Plasmodium|Rep: Putative uncharacterized protein
            PFE1555c - Plasmodium falciparum (isolate 3D7)
          Length = 2698

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = -2

Query: 405  IAIHKRIAQKKNNKLCSLINSK*IFIIDDNFISHKNKKLLILEYLMN*ITSIIQRYCFYN 226
            I  + RI   KN+ +    N   I I   N   H    L I E  +N ITSI   + +YN
Sbjct: 1520 IVSYIRIKHVKNHNIIKEFNYLSIKINKYNLFKH----LDIKEERLNYITSIYHSFDYYN 1575

Query: 225  K-LKGAHRDYAFKLNKLFIQYGN 160
            K +K   ++   K+N L  QY N
Sbjct: 1576 KRIKKKDQEKINKINDLVYQYSN 1598


>UniRef50_A5K948 Cluster: Putative uncharacterized protein; n=4;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 1121

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = -2

Query: 363  LCSLINSK*IFIIDDNFISHKNKKLLILEYLMN*ITSIIQR-YCFYNKLKGAHRDYAFKL 187
            +C LI+   +  +DDNF+    K +++ + + + I  +I + Y FYN  K    DY  +L
Sbjct: 816  ICELID---VDFVDDNFVQRLRKAMILHKCVDDTIVFLIFKVYFFYNFAKHV-CDYLREL 871

Query: 186  NKLFIQ 169
            N L++Q
Sbjct: 872  NALYVQ 877


>UniRef50_A3DH91 Cluster: Periplasmic sensor signal transduction
           histidine kinase precursor; n=1; Clostridium
           thermocellum ATCC 27405|Rep: Periplasmic sensor signal
           transduction histidine kinase precursor - Clostridium
           thermocellum (strain ATCC 27405 / DSM 1237)
          Length = 341

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 282 LEYLMN*ITSIIQRYCFYNKLKGAHRDYAFKLNKL 178
           L+Y+ N +   I +  FY++LKG  +DY F+   L
Sbjct: 158 LDYIRNRMQEFINQMLFYSRLKGTQKDYLFEFINL 192


>UniRef50_Q6LF65 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 380

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 17/38 (44%), Positives = 26/38 (68%)
 Frame = -2

Query: 405 IAIHKRIAQKKNNKLCSLINSK*IFIIDDNFISHKNKK 292
           I+I  RI +K+NNKLCS I +  I+I ++  +S+ N K
Sbjct: 91  ISIENRIRKKRNNKLCSNILNYNIYIPNNMKVSNINLK 128


>UniRef50_A0CXD5 Cluster: Chromosome undetermined scaffold_30, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_30,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 263

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 21/91 (23%), Positives = 41/91 (45%)
 Frame = -2

Query: 399 IHKRIAQKKNNKLCSLINSK*IFIIDDNFISHKNKKLLILEYLMN*ITSIIQRYCFYNKL 220
           + KRI + K  K   ++    +  +D+  I HKN + L+  + +  +  +  R C     
Sbjct: 80  VDKRIVKLKKQKFEKVV----VLDLDETLIYHKNNQTLVRPFCLAFLERL-SRICTLVLF 134

Query: 219 KGAHRDYAFKLNKLFIQYGNFFTEF*FSKHL 127
             A +D+A K+ K+      +F     S+H+
Sbjct: 135 TAAKQDHAIKMLKIIDPNKKYFKAICTSEHM 165


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 506,890,346
Number of Sequences: 1657284
Number of extensions: 8910780
Number of successful extensions: 15038
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15030
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)