Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0881
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    23   1.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.5  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   9.7  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   9.7  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   9.7  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 215 GRIAIMPLS*TNYLFNMATFLLSFDFRNTFLHLNVFVNSI 96
           GRI +  LS   +L   +    +F+     +HL+VFV ++
Sbjct: 183 GRIVLQLLSSLGFLLYASKKQFTFEETFAIIHLSVFVYTL 222


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 158 FLLSFDFRNTFLHLNVFVNSITI 90
           FL +  F+N F  +NVF   + +
Sbjct: 453 FLTNMTFQNVFAVINVFSGELPV 475


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 158 FLLSFDFRNTFLHLNVFVNSITI 90
           FL +  F+N F  +NVF   + +
Sbjct: 453 FLTNMTFQNVFAVINVFSGELPV 475


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 333 IFIYCLLNYTIYCFSFVRSFY 395
           I I CL+ +    FSF   +Y
Sbjct: 257 IIIGCLIQFNTIVFSFCYCYY 277


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 261 ITSIIQRYC 235
           IT+I+QRYC
Sbjct: 69  ITTILQRYC 77


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 261 ITSIIQRYC 235
           IT+I+QRYC
Sbjct: 65  ITTILQRYC 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,097
Number of Sequences: 336
Number of extensions: 2802
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)