Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0879
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)                    31   1.1  
SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)          30   1.9  
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    29   4.3  
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)                      28   5.7  
SB_46308| Best HMM Match : IMS (HMM E-Value=0)                         28   7.6  
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)
          Length = 999

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 109 SQCTKNNAEDKV-PEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKS 285
           + CT++N  D++  E  A  +   + L   +     K   ++A P G LD+  +K C K+
Sbjct: 327 ADCTRDNTRDRIIAECNAVRQALQDLLSEYMSHAGGK---KKAVPGGPLDKAIEKMCSKT 383

Query: 286 AQLKG 300
           + L+G
Sbjct: 384 SGLRG 388


>SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)
          Length = 364

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 385 WYCFGHH*CGSHSRCLHKDAR 323
           W+C+G+   G  SRC+H+  R
Sbjct: 302 WFCWGYFSYGESSRCIHRGVR 322


>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 13  FLVTMXWKTVLITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKG 192
           FL  +     ++++   GV  D +S I  +V      N A D + EVE A R        
Sbjct: 284 FLKVLKGAGAVLSVIGIGV--DLYSIINTLVECDKKSNQAADAIKEVEKAEREVSKSETE 341

Query: 193 LVDLNV-LKTEIEE 231
           L D N  LKT + E
Sbjct: 342 LRDFNTELKTFMRE 355


>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
          Length = 1243

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 251 SAPFGLASSISVFRTFKSTSPLRQFP 174
           S PFG+ S+ S+ + F S + L++FP
Sbjct: 458 SLPFGIQSASSLVKLFLSNNKLKEFP 483


>SB_46308| Best HMM Match : IMS (HMM E-Value=0)
          Length = 1245

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 614 TLFEGFHDTXGHLINFCAFFNKAQVMPD 531
           TL++G H T  H+I  CA +  A +  D
Sbjct: 466 TLYKGAHYTRMHIIQGCALYKGAMITKD 493


>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 175 GNCLKGLVDLNVLKTEIEE 231
           GNCLKG+V++NV    IE+
Sbjct: 277 GNCLKGIVNVNVSPNIIEQ 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,108,606
Number of Sequences: 59808
Number of extensions: 372281
Number of successful extensions: 950
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)