Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0879
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12370.1 68418.m01455 exocyst complex component Sec10-related...    32   0.29 
At4g15830.1 68417.m02408 expressed protein                             32   0.38 
At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containi...    29   2.7  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    28   4.7  
At4g23530.1 68417.m03391 expressed protein                             27   8.2  
At1g24610.1 68414.m03096 SET domain-containing protein low simil...    27   8.2  

>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
           low similarity to SP|O00471 Exocyst complex component
           Sec10 (hSec10) {Homo sapiens}
          Length = 858

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
 Frame = +1

Query: 145 PEVEAALRTFGNCLKGLVD--------LNVLKTEI--EEAKPNGALDEVFKKYCDKSAQL 294
           PEV+  L  F +  K LVD        LN LK E+  +++K    L E      +  A+L
Sbjct: 87  PEVDGLLSLFKDACKELVDLRKQVDGRLNTLKKEVSTQDSKHRKTLTEGVDGLFESFARL 146

Query: 295 KGCISSVLQGVRPCVGNDYANHINDAQNSTNQLIDFVCY 411
            G ISSV Q     +G D+    +  + + +Q ID + Y
Sbjct: 147 DGRISSVGQTAAK-IG-DHLQSADAQRETASQTIDLIKY 183


>At4g15830.1 68417.m02408 expressed protein
          Length = 296

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +1

Query: 76  DDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALD 255
           ++  +   ++ +Q   +   DK+PE   A R+  N L      N      EE    G+  
Sbjct: 217 NEMEEFGMILLAQMAADQLSDKLPEAREAARSMVNSLFEKFTWN------EEEDEEGSKQ 270

Query: 256 EVFKKYCDKS 285
           E +KK+C+K+
Sbjct: 271 EAWKKFCEKN 280


>At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 879

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +1

Query: 46  ITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEI 225
           IT F   VL  +  +   V  +     N EDK+PE+++     G    G +D+ V    +
Sbjct: 740 ITAFIGNVLLHNAMKSKGVYEAWTRMRNIEDKIPEMKSLGELIG-LFSGRIDMEVELKRL 798

Query: 226 EE 231
           +E
Sbjct: 799 DE 800


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 70   LADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVD 201
            +AD   QI+AV   + T  +A +    V  A  ++G+C   L +
Sbjct: 1443 MADSSGQISAVAMERLTAASAAEPYESVSCAFVSYGSCAMDLAE 1486


>At4g23530.1 68417.m03391 expressed protein
          Length = 396

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 503 FKKHVX-RFSVFCXKHSGPPSAMNKAIRSPS 414
           F+KHV  RFS      S PPS+ + A+  PS
Sbjct: 39  FQKHVAERFSDLITSPSPPPSSSSSAVSQPS 69


>At1g24610.1 68414.m03096 SET domain-containing protein low
           similarity to SP|Q43088 Ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (EC 2.1.1.127)
           {Pisum sativum}; contains Pfam profile PF00856: SET
           domain
          Length = 476

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -1

Query: 257 SSSAPFGLASSISVFRT 207
           S+ APFG+A+ I+VFRT
Sbjct: 392 SAVAPFGIANEIAVFRT 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,015,798
Number of Sequences: 28952
Number of extensions: 249516
Number of successful extensions: 622
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)